Cluster: A112.CMAG_1_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: A112.CMAG_1
- CGC Family ID: CGCFAM_01527
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A112_contig_11764 | A112_contig_11764_1103 | 1159367 | 1160032 | + | 3.A.1.23.8 |
| TC | A112_contig_11764 | A112_contig_11764_1104 | 1160042 | 1160332 | + | 3.A.1.23.8 |
| pfam | A112_contig_11764 | A112_contig_11764_1105 | 1160374 | 1161072 | + | CbiQ |
| TC | A112_contig_11764 | A112_contig_11764_1106 | 1161072 | 1161908 | + | 3.A.1.23.2 |
| pfam | A112_contig_11764 | A112_contig_11764_1107 | 1161957 | 1162415 | + | DMRL_synthase |
| CAZyme | A112_contig_11764 | A112_contig_11764_1108 | 1162429 | 1163151 | + | GT2 |
Gene ID: A112_contig_11764_1103
Type: TC
Location: 1159367 - 1160032 (+)
Type: TC
Location: 1159367 - 1160032 (+)
Gene ID: A112_contig_11764_1104
Type: TC
Location: 1160042 - 1160332 (+)
Type: TC
Location: 1160042 - 1160332 (+)
Gene ID: A112_contig_11764_1105
Type: pfam
Location: 1160374 - 1161072 (+)
Type: pfam
Location: 1160374 - 1161072 (+)
Gene ID: A112_contig_11764_1106
Type: TC
Location: 1161072 - 1161908 (+)
Type: TC
Location: 1161072 - 1161908 (+)
Gene ID: A112_contig_11764_1107
Type: pfam
Location: 1161957 - 1162415 (+)
Type: pfam
Location: 1161957 - 1162415 (+)
Gene ID: A112_contig_11764_1108
Type: CAZyme
Location: 1162429 - 1163151 (+)
Type: CAZyme
Location: 1162429 - 1163151 (+)
Taxonomic Lineage
Domain
Archaea
Phylum
Methanobacteriota
Class
Methanobacteria
Order
Methanobacteriales
Family
Methanobacteriaceae
Genus
Methanobrevibacter_A
Species
Methanobrevibacter_A smithii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A112_contig_11764_1103 | vegan > omnivore | 19.00999 | 0.00565 |
| A112_contig_11764_1104 | vegan > omnivore | 19.28652 | 0.00565 |
| A112_contig_11764_1106 | vegan > omnivore | 2.42707 | 0.00565 |
| A112_contig_11764_1106 | vegetarian > omnivore | 2.22239 | 0.01848 |
| A112_contig_11764_1108 | vegan > omnivore | 1.83677 | 0.00565 |
| A112_contig_11764_1108 | vegetarian > omnivore | 1.80735 | 0.01848 |