Cluster: A112.CMAG_1_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: A112.CMAG_1
- CGC Family ID: CGCFAM_00074
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A112_contig_11764 | A112_contig_11764_1080 | 1133167 | 1134396 | - | 3.A.1.103.1 |
| pfam | A112_contig_11764 | A112_contig_11764_1081 | 1134410 | 1135189 | - | ABC2_membrane |
| CAZyme | A112_contig_11764 | A112_contig_11764_1082 | 1135279 | 1138860 | + | GT2 | GT2 |
| pfam | A112_contig_11764 | A112_contig_11764_1083 | 1138952 | 1139764 | + | Hexapep_2 |
| CAZyme | A112_contig_11764 | A112_contig_11764_1084 | 1140168 | 1140908 | + | GT2 |
Gene ID: A112_contig_11764_1080
Type: TC
Location: 1133167 - 1134396 (-)
Type: TC
Location: 1133167 - 1134396 (-)
Gene ID: A112_contig_11764_1081
Type: pfam
Location: 1134410 - 1135189 (-)
Type: pfam
Location: 1134410 - 1135189 (-)
Gene ID: A112_contig_11764_1082
Type: CAZyme
Location: 1135279 - 1138860 (+)
Type: CAZyme
Location: 1135279 - 1138860 (+)
Gene ID: A112_contig_11764_1083
Type: pfam
Location: 1138952 - 1139764 (+)
Type: pfam
Location: 1138952 - 1139764 (+)
Gene ID: A112_contig_11764_1084
Type: CAZyme
Location: 1140168 - 1140908 (+)
Type: CAZyme
Location: 1140168 - 1140908 (+)
Taxonomic Lineage
Domain
Archaea
Phylum
Methanobacteriota
Class
Methanobacteria
Order
Methanobacteriales
Family
Methanobacteriaceae
Genus
Methanobrevibacter_A
Species
Methanobrevibacter_A smithii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A112_contig_11764_1083 | vegan > omnivore | 18.17106 | 0.00565 |