Cluster: A112.CMAG_1_CGC4
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: A112.CMAG_1
- CGC Family ID: CGCFAM_01856
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A112_contig_11764 | A112_contig_11764_1009 | 1034570 | 1035859 | + | 3.A.18.1.1 |
| TF | A112_contig_11764 | A112_contig_11764_1010 | 1035860 | 1036663 | - | MarR |
| pfam | A112_contig_11764 | A112_contig_11764_1011 | 1036719 | 1038140 | - | DHH | DHHA1 | DHH_CID |
| TC | A112_contig_11764 | A112_contig_11764_1012 | 1038137 | 1038406 | - | 3.A.5.7.1 |
| pfam | A112_contig_11764 | A112_contig_11764_1013 | 1038425 | 1039519 | - | Amino_oxidase | GLF | NAD_binding_8 |
| CAZyme | A112_contig_11764 | A112_contig_11764_1014 | 1039526 | 1040629 | - | GT2 |
| STP | A112_contig_11764 | A112_contig_11764_1015 | 1040619 | 1041392 | - | HEM4 |
| NULL(UNKNOWN) | A112_contig_11764 | A112_contig_11764_1016 | 1041864 | 1041992 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A112_contig_11764 | A112_contig_11764_1017 | 1042353 | 1043375 | + | GT2 |
Gene ID: A112_contig_11764_1009
Type: TC
Location: 1034570 - 1035859 (+)
Type: TC
Location: 1034570 - 1035859 (+)
Gene ID: A112_contig_11764_1010
Type: TF
Location: 1035860 - 1036663 (-)
Type: TF
Location: 1035860 - 1036663 (-)
Gene ID: A112_contig_11764_1011
Type: pfam
Location: 1036719 - 1038140 (-)
Type: pfam
Location: 1036719 - 1038140 (-)
Gene ID: A112_contig_11764_1012
Type: TC
Location: 1038137 - 1038406 (-)
Type: TC
Location: 1038137 - 1038406 (-)
Gene ID: A112_contig_11764_1013
Type: pfam
Location: 1038425 - 1039519 (-)
Type: pfam
Location: 1038425 - 1039519 (-)
Gene ID: A112_contig_11764_1014
Type: CAZyme
Location: 1039526 - 1040629 (-)
Type: CAZyme
Location: 1039526 - 1040629 (-)
Gene ID: A112_contig_11764_1015
Type: STP
Location: 1040619 - 1041392 (-)
Type: STP
Location: 1040619 - 1041392 (-)
Gene ID: A112_contig_11764_1016
Type:
Location: 1041864 - 1041992 (-)
Type:
Location: 1041864 - 1041992 (-)
Gene ID: A112_contig_11764_1017
Type: CAZyme
Location: 1042353 - 1043375 (+)
Type: CAZyme
Location: 1042353 - 1043375 (+)
Taxonomic Lineage
Domain
Archaea
Phylum
Methanobacteriota
Class
Methanobacteria
Order
Methanobacteriales
Family
Methanobacteriaceae
Genus
Methanobrevibacter_A
Species
Methanobrevibacter_A smithii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A112_contig_11764_1010 | vegan > omnivore | 18.91873 | 0.00565 |
| A112_contig_11764_1010 | vegetarian > omnivore | 19.98327 | 0.00000 |
| A112_contig_11764_1011 | vegan > omnivore | 3.28269 | 0.00565 |
| A112_contig_11764_1012 | vegan > omnivore | 22.30984 | 0.00565 |
| A112_contig_11764_1014 | vegan > omnivore | 21.15984 | 0.00565 |
| A112_contig_11764_1016 | vegan > omnivore | 19.59443 | 0.00565 |
| A112_contig_11764_1017 | vegan > omnivore | 18.63482 | 0.00565 |