Cluster: A112.CMAG_1_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A112.CMAG_1
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A112_contig_11764 | A112_contig_11764_973 | 995286 | 996668 | - | 2.A.1.3.70 |
| TC | A112_contig_11764 | A112_contig_11764_974 | 997179 | 998570 | - | 2.A.1.3.70 |
| NULL(UNKNOWN) | A112_contig_11764 | A112_contig_11764_975 | 998669 | 999283 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A112_contig_11764 | A112_contig_11764_976 | 999285 | 1001054 | - | GT2 |
Gene ID: A112_contig_11764_973
Type: TC
Location: 995286 - 996668 (-)
Type: TC
Location: 995286 - 996668 (-)
Gene ID: A112_contig_11764_974
Type: TC
Location: 997179 - 998570 (-)
Type: TC
Location: 997179 - 998570 (-)
Gene ID: A112_contig_11764_975
Type:
Location: 998669 - 999283 (-)
Type:
Location: 998669 - 999283 (-)
Gene ID: A112_contig_11764_976
Type: CAZyme
Location: 999285 - 1001054 (-)
Type: CAZyme
Location: 999285 - 1001054 (-)
Taxonomic Lineage
Domain
Archaea
Phylum
Methanobacteriota
Class
Methanobacteria
Order
Methanobacteriales
Family
Methanobacteriaceae
Genus
Methanobrevibacter_A
Species
Methanobrevibacter_A smithii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A112_contig_11764_973 | vegan > omnivore | 18.90451 | 0.00565 |
| A112_contig_11764_974 | vegan > omnivore | 18.84351 | 0.00565 |