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Cluster: A112.CMAG_1_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC A112_contig_11764 A112_contig_11764_254 251465 252370 - 2.A.69.4.3
pfam A112_contig_11764 A112_contig_11764_255 252685 253620 - RecA | ATPase | Rad51 | AAA_25 | HHH_5
pfam A112_contig_11764 A112_contig_11764_256 253651 256032 - tRNA_anti-codon | Rep_fac-A_C | CDC24_OB3
TC A112_contig_11764 A112_contig_11764_257 256187 257590 - 9.B.18.1.1
CAZyme A112_contig_11764 A112_contig_11764_258 257640 258497 - GT2
CAZyme A112_contig_11764 A112_contig_11764_259 258513 259478 - GT2
CAZyme A112_contig_11764 A112_contig_11764_260 259484 260446 - GT2
pfam A112_contig_11764 A112_contig_11764_261 260439 261533 - Glyphos_transf
TC A112_contig_11764 A112_contig_11764_262 261536 263296 - 3.A.1.103.1
TC A112_contig_11764 A112_contig_11764_263 263312 264097 - 3.A.1.103.6
CAZyme A112_contig_11764 A112_contig_11764_264 264272 265306 - GT2
CAZyme A112_contig_11764 A112_contig_11764_265 265308 266354 - GT2
CAZyme A112_contig_11764 A112_contig_11764_266 266344 267852 - GT4
CAZyme A112_contig_11764 A112_contig_11764_267 267849 269450 - GT2
CAZyme A112_contig_11764 A112_contig_11764_268 269443 270483 - GT116
NULL(UNKNOWN) A112_contig_11764 A112_contig_11764_269 270633 270911 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) A112_contig_11764 A112_contig_11764_270 270930 271196 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme A112_contig_11764 A112_contig_11764_271 271737 273275 - GT4
CAZyme A112_contig_11764 A112_contig_11764_272 273313 274422 + GT2
TF A112_contig_11764 A112_contig_11764_273 274773 276215 - HTH_11
CAZyme A112_contig_11764 A112_contig_11764_274 276340 278907 - GT116
CAZyme A112_contig_11764 A112_contig_11764_275 278912 280450 - GT2
CAZyme A112_contig_11764 A112_contig_11764_276 280457 281872 - GT2
CAZyme A112_contig_11764 A112_contig_11764_277 281869 283008 - GT2
Gene ID: A112_contig_11764_254
Type: TC
Location: 251465 - 252370 (-)
Gene ID: A112_contig_11764_255
Type: pfam
Location: 252685 - 253620 (-)
Gene ID: A112_contig_11764_256
Type: pfam
Location: 253651 - 256032 (-)
Gene ID: A112_contig_11764_257
Type: TC
Location: 256187 - 257590 (-)
Gene ID: A112_contig_11764_258
Type: CAZyme
Location: 257640 - 258497 (-)
Gene ID: A112_contig_11764_259
Type: CAZyme
Location: 258513 - 259478 (-)
Gene ID: A112_contig_11764_260
Type: CAZyme
Location: 259484 - 260446 (-)
Gene ID: A112_contig_11764_261
Type: pfam
Location: 260439 - 261533 (-)
Gene ID: A112_contig_11764_262
Type: TC
Location: 261536 - 263296 (-)
Gene ID: A112_contig_11764_263
Type: TC
Location: 263312 - 264097 (-)
Gene ID: A112_contig_11764_264
Type: CAZyme
Location: 264272 - 265306 (-)
Gene ID: A112_contig_11764_265
Type: CAZyme
Location: 265308 - 266354 (-)
Gene ID: A112_contig_11764_266
Type: CAZyme
Location: 266344 - 267852 (-)
Gene ID: A112_contig_11764_267
Type: CAZyme
Location: 267849 - 269450 (-)
Gene ID: A112_contig_11764_268
Type: CAZyme
Location: 269443 - 270483 (-)
Gene ID: A112_contig_11764_269
Type:
Location: 270633 - 270911 (-)
Gene ID: A112_contig_11764_270
Type:
Location: 270930 - 271196 (-)
Gene ID: A112_contig_11764_271
Type: CAZyme
Location: 271737 - 273275 (-)
Gene ID: A112_contig_11764_272
Type: CAZyme
Location: 273313 - 274422 (+)
Gene ID: A112_contig_11764_273
Type: TF
Location: 274773 - 276215 (-)
Gene ID: A112_contig_11764_274
Type: CAZyme
Location: 276340 - 278907 (-)
Gene ID: A112_contig_11764_275
Type: CAZyme
Location: 278912 - 280450 (-)
Gene ID: A112_contig_11764_276
Type: CAZyme
Location: 280457 - 281872 (-)
Gene ID: A112_contig_11764_277
Type: CAZyme
Location: 281869 - 283008 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
A112_contig_11764_258 vegan > omnivore 21.64468 0.00565
A112_contig_11764_258 vegetarian > omnivore 21.47445 0.00000
A112_contig_11764_259 vegan > omnivore 20.76708 0.00565
A112_contig_11764_259 vegetarian > omnivore 20.71844 0.00000
A112_contig_11764_260 vegan > omnivore 21.45784 0.00565
A112_contig_11764_261 vegan > omnivore 19.27671 0.00565
A112_contig_11764_265 vegetarian > omnivore 2.65535 0.01848
A112_contig_11764_266 vegan > omnivore 1.15358 0.00565
A112_contig_11764_266 vegetarian > omnivore 2.80735 0.01848
A112_contig_11764_267 vegan > omnivore 20.37697 0.00565
A112_contig_11764_267 vegetarian > omnivore 21.31059 0.00000
A112_contig_11764_269 vegan > omnivore 19.65433 0.00565
A112_contig_11764_270 vegan > omnivore 19.21969 0.00565
A112_contig_11764_271 vegan > omnivore 21.76529 0.00565
A112_contig_11764_271 vegetarian > omnivore 20.63150 0.00000
A112_contig_11764_276 vegan > omnivore 5.67162 0.00565
A112_contig_11764_276 vegetarian > omnivore 4.71424 0.00000
A112_contig_11764_277 vegetarian > omnivore 1.58496 0.01848

🧭 Explore Read Mapping of CGC

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