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Cluster: A111.bin_55_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC A111_contig_4188 A111_contig_4188_23 34300 34533 - 3.D.1.6.4
pfam A111_contig_4188 A111_contig_4188_24 34922 35947 + Virulence_RhuM
pfam A111_contig_4188 A111_contig_4188_25 36132 38030 + Orn_Arg_deC_N | Arg_decarb_HB | Arg_decarbox_C
TC A111_contig_4188 A111_contig_4188_26 38207 38815 + 2.A.123.4.1
pfam A111_contig_4188 A111_contig_4188_27 38917 39723 - PseudoU_synth_1
CAZyme A111_contig_4188 A111_contig_4188_28 39780 40520 - GT2
CAZyme A111_contig_4188 A111_contig_4188_29 40580 42262 - GT83
Gene ID: A111_contig_4188_23
Type: TC
Location: 34300 - 34533 (-)
Gene ID: A111_contig_4188_24
Type: pfam
Location: 34922 - 35947 (+)
Gene ID: A111_contig_4188_25
Type: pfam
Location: 36132 - 38030 (+)
Gene ID: A111_contig_4188_26
Type: TC
Location: 38207 - 38815 (+)
Gene ID: A111_contig_4188_27
Type: pfam
Location: 38917 - 39723 (-)
Gene ID: A111_contig_4188_28
Type: CAZyme
Location: 39780 - 40520 (-)
Gene ID: A111_contig_4188_29
Type: CAZyme
Location: 40580 - 42262 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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