Cluster: A111.bin_17_CGC21
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: A111.bin_17
- CGC Family ID: CGCFAM_04232
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A111_contig_1209 | A111_contig_1209_2031 | 2424053 | 2426134 | - | 1.B.52.2.1 |
| STP | A111_contig_1209 | A111_contig_1209_2032 | 2426152 | 2427594 | - | CHASE | GGDEF |
| NULL(UNKNOWN) | A111_contig_1209 | A111_contig_1209_2033 | 2428303 | 2428719 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A111_contig_1209 | A111_contig_1209_2034 | 2428847 | 2430055 | + | GT2 |
| pfam | A111_contig_1209 | A111_contig_1209_2035 | 2430181 | 2431179 | + | NAD_Gly3P_dh_N | NAD_Gly3P_dh_C | GPD_NAD_C_bact |
| TC | A111_contig_1209 | A111_contig_1209_2036 | 2431507 | 2435328 | + | 3.D.1.4.3 |
| TC | A111_contig_1209 | A111_contig_1209_2037 | 2435486 | 2436448 | + | 3.D.1.4.3 |
| TC | A111_contig_1209 | A111_contig_1209_2038 | 2436461 | 2436910 | + | 3.D.1.4.3 |
| STP | A111_contig_1209 | A111_contig_1209_2039 | 2436913 | 2437503 | + | Fer4 |
| TC | A111_contig_1209 | A111_contig_1209_2040 | 2437527 | 2438114 | + | 3.D.1.4.3 |
| TC | A111_contig_1209 | A111_contig_1209_2041 | 2438111 | 2439196 | + | 3.D.1.4.3 |
| pfam | A111_contig_1209 | A111_contig_1209_2042 | 2439200 | 2439643 | + | HypA |
| TC | A111_contig_1209 | A111_contig_1209_2043 | 2439636 | 2440823 | + | 3.D.1.9.2 |
Gene ID: A111_contig_1209_2031
Type: TC
Location: 2424053 - 2426134 (-)
Type: TC
Location: 2424053 - 2426134 (-)
Gene ID: A111_contig_1209_2032
Type: STP
Location: 2426152 - 2427594 (-)
Type: STP
Location: 2426152 - 2427594 (-)
Gene ID: A111_contig_1209_2033
Type:
Location: 2428303 - 2428719 (+)
Type:
Location: 2428303 - 2428719 (+)
Gene ID: A111_contig_1209_2034
Type: CAZyme
Location: 2428847 - 2430055 (+)
Type: CAZyme
Location: 2428847 - 2430055 (+)
Gene ID: A111_contig_1209_2035
Type: pfam
Location: 2430181 - 2431179 (+)
Type: pfam
Location: 2430181 - 2431179 (+)
Gene ID: A111_contig_1209_2036
Type: TC
Location: 2431507 - 2435328 (+)
Type: TC
Location: 2431507 - 2435328 (+)
Gene ID: A111_contig_1209_2037
Type: TC
Location: 2435486 - 2436448 (+)
Type: TC
Location: 2435486 - 2436448 (+)
Gene ID: A111_contig_1209_2038
Type: TC
Location: 2436461 - 2436910 (+)
Type: TC
Location: 2436461 - 2436910 (+)
Gene ID: A111_contig_1209_2039
Type: STP
Location: 2436913 - 2437503 (+)
Type: STP
Location: 2436913 - 2437503 (+)
Gene ID: A111_contig_1209_2040
Type: TC
Location: 2437527 - 2438114 (+)
Type: TC
Location: 2437527 - 2438114 (+)
Gene ID: A111_contig_1209_2041
Type: TC
Location: 2438111 - 2439196 (+)
Type: TC
Location: 2438111 - 2439196 (+)
Gene ID: A111_contig_1209_2042
Type: pfam
Location: 2439200 - 2439643 (+)
Type: pfam
Location: 2439200 - 2439643 (+)
Gene ID: A111_contig_1209_2043
Type: TC
Location: 2439636 - 2440823 (+)
Type: TC
Location: 2439636 - 2440823 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Desulfobacterota
Class
Desulfovibrionia
Order
Desulfovibrionales
Family
Desulfovibrionaceae
Genus
Desulfovibrio
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.