Cluster: A103.bin_16_CGC8
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: A103.bin_16
- CGC Family ID: CGCFAM_06493
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A103_contig_733 | A103_contig_733_22 | 22635 | 23594 | + | GH43_26 |
| TF | A103_contig_733 | A103_contig_733_23 | 23627 | 24565 | - | MarR |
| TC | A103_contig_733 | A103_contig_733_24 | 24938 | 26293 | + | 3.A.1.1.34 |
| TC | A103_contig_733 | A103_contig_733_25 | 26403 | 27311 | + | 3.A.1.1.34 |
| TC | A103_contig_733 | A103_contig_733_26 | 27316 | 28215 | + | 3.A.1.1.34 |
| CAZyme | A103_contig_733 | A103_contig_733_27 | 28517 | 29287 | + | GH51_1 |
| CAZyme | A103_contig_733 | A103_contig_733_28 | 29238 | 30020 | + | GH51_1 |
| pfam | A103_contig_733 | A103_contig_733_29 | 30105 | 30440 | + | DUF6171 |
| CAZyme | A103_contig_733 | A103_contig_733_30 | 30698 | 31954 | + | GH51_1 |
| pfam | A103_contig_733 | A103_contig_733_31 | 31914 | 32216 | + | Alpha-L-AF_C |
| pfam | A103_contig_733 | A103_contig_733_32 | 32620 | 33357 | + | Glucosamine_iso |
| CAZyme | A103_contig_733 | A103_contig_733_33 | 33721 | 35376 | - | GH94 |
Gene ID: A103_contig_733_22
Type: CAZyme
Location: 22635 - 23594 (+)
Type: CAZyme
Location: 22635 - 23594 (+)
Gene ID: A103_contig_733_23
Type: TF
Location: 23627 - 24565 (-)
Type: TF
Location: 23627 - 24565 (-)
Gene ID: A103_contig_733_24
Type: TC
Location: 24938 - 26293 (+)
Type: TC
Location: 24938 - 26293 (+)
Gene ID: A103_contig_733_25
Type: TC
Location: 26403 - 27311 (+)
Type: TC
Location: 26403 - 27311 (+)
Gene ID: A103_contig_733_26
Type: TC
Location: 27316 - 28215 (+)
Type: TC
Location: 27316 - 28215 (+)
Gene ID: A103_contig_733_27
Type: CAZyme
Location: 28517 - 29287 (+)
Type: CAZyme
Location: 28517 - 29287 (+)
Gene ID: A103_contig_733_28
Type: CAZyme
Location: 29238 - 30020 (+)
Type: CAZyme
Location: 29238 - 30020 (+)
Gene ID: A103_contig_733_29
Type: pfam
Location: 30105 - 30440 (+)
Type: pfam
Location: 30105 - 30440 (+)
Gene ID: A103_contig_733_30
Type: CAZyme
Location: 30698 - 31954 (+)
Type: CAZyme
Location: 30698 - 31954 (+)
Gene ID: A103_contig_733_31
Type: pfam
Location: 31914 - 32216 (+)
Type: pfam
Location: 31914 - 32216 (+)
Gene ID: A103_contig_733_32
Type: pfam
Location: 32620 - 33357 (+)
Type: pfam
Location: 32620 - 33357 (+)
Gene ID: A103_contig_733_33
Type: CAZyme
Location: 33721 - 35376 (-)
Type: CAZyme
Location: 33721 - 35376 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A103_contig_733_23 | vegetarian > vegan | 1.42233 | 0.01591 |