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Cluster: A103.bin_16_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC A103_contig_341 A103_contig_341_229 273062 273937 - 3.A.1.132.6
TF A103_contig_341 A103_contig_341_230 273930 274313 - GntR
TF A103_contig_341 A103_contig_341_231 274533 275291 - HTH_AraC | HTH_AraC
TC A103_contig_341 A103_contig_341_232 275302 277074 - 9.B.33.1.1
TC A103_contig_341 A103_contig_341_233 277309 278190 + 3.A.1.1.45
TC A103_contig_341 A103_contig_341_234 278187 279020 + 3.A.1.1.45
TC A103_contig_341 A103_contig_341_235 279080 280342 + 3.A.1.1.45
peptidase A103_contig_341 A103_contig_341_236 280404 281327 + S12.UPW
CAZyme A103_contig_341 A103_contig_341_237 281562 283691 + GH13_11
TC A103_contig_341 A103_contig_341_238 283871 285763 - 3.A.1.11.7
TC A103_contig_341 A103_contig_341_239 285767 286603 - 3.A.1.11.1
TC A103_contig_341 A103_contig_341_240 286604 288181 - 3.A.1.11.8
TF A103_contig_341 A103_contig_341_241 288245 288778 - HTH_3
TC A103_contig_341 A103_contig_341_242 289115 289681 - 3.A.1.25.2
pfam A103_contig_341 A103_contig_341_243 289893 290741 - DegV
STP A103_contig_341 A103_contig_341_244 290968 291471 + TetR_N
TC A103_contig_341 A103_contig_341_245 291524 293050 - 2.A.66.1.33
Gene ID: A103_contig_341_229
Type: TC
Location: 273062 - 273937 (-)
Gene ID: A103_contig_341_230
Type: TF
Location: 273930 - 274313 (-)
Gene ID: A103_contig_341_231
Type: TF
Location: 274533 - 275291 (-)
Gene ID: A103_contig_341_232
Type: TC
Location: 275302 - 277074 (-)
Gene ID: A103_contig_341_233
Type: TC
Location: 277309 - 278190 (+)
Gene ID: A103_contig_341_234
Type: TC
Location: 278187 - 279020 (+)
Gene ID: A103_contig_341_235
Type: TC
Location: 279080 - 280342 (+)
Gene ID: A103_contig_341_236
Type: peptidase
Location: 280404 - 281327 (+)
Gene ID: A103_contig_341_237
Type: CAZyme
Location: 281562 - 283691 (+)
Gene ID: A103_contig_341_238
Type: TC
Location: 283871 - 285763 (-)
Gene ID: A103_contig_341_239
Type: TC
Location: 285767 - 286603 (-)
Gene ID: A103_contig_341_240
Type: TC
Location: 286604 - 288181 (-)
Gene ID: A103_contig_341_241
Type: TF
Location: 288245 - 288778 (-)
Gene ID: A103_contig_341_242
Type: TC
Location: 289115 - 289681 (-)
Gene ID: A103_contig_341_243
Type: pfam
Location: 289893 - 290741 (-)
Gene ID: A103_contig_341_244
Type: STP
Location: 290968 - 291471 (+)
Gene ID: A103_contig_341_245
Type: TC
Location: 291524 - 293050 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
A103_contig_341_230 vegetarian > vegan 1.23283 0.01591
A103_contig_341_242 vegetarian > vegan 1.31933 0.01591
A103_contig_341_243 vegetarian > vegan 1.31176 0.01591
A103_contig_341_245 vegetarian > vegan 1.73261 0.01591

🧭 Explore Read Mapping of CGC

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