Cluster: A103.bin_16_CGC28
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: A103.bin_16
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A103_contig_341 | A103_contig_341_179 | 215339 | 216931 | - | 3.A.1.5.2 |
| TC | A103_contig_341 | A103_contig_341_180 | 217091 | 218065 | - | 3.A.1.5.15 |
| TC | A103_contig_341 | A103_contig_341_181 | 218062 | 219090 | - | 3.A.1.5.2 |
| TC | A103_contig_341 | A103_contig_341_182 | 219105 | 220052 | - | 3.A.1.5.2 |
| TC | A103_contig_341 | A103_contig_341_183 | 220066 | 220992 | - | 3.A.1.5.22 |
| pfam | A103_contig_341 | A103_contig_341_184 | 221282 | 222412 | + | Ala_racemase_C | Ala_racemase_N |
| peptidase | A103_contig_341 | A103_contig_341_185 | 222473 | 223702 | + | M20.UPD |
| TC | A103_contig_341 | A103_contig_341_186 | 223738 | 224532 | + | 3.A.1.5.2 |
| pfam | A103_contig_341 | A103_contig_341_187 | 224609 | 225385 | - | adh_short | KR | adh_short_C2 |
| CAZyme | A103_contig_341 | A103_contig_341_188 | 225527 | 227029 | - | GH51_1 |
Gene ID: A103_contig_341_179
Type: TC
Location: 215339 - 216931 (-)
Type: TC
Location: 215339 - 216931 (-)
Gene ID: A103_contig_341_180
Type: TC
Location: 217091 - 218065 (-)
Type: TC
Location: 217091 - 218065 (-)
Gene ID: A103_contig_341_181
Type: TC
Location: 218062 - 219090 (-)
Type: TC
Location: 218062 - 219090 (-)
Gene ID: A103_contig_341_182
Type: TC
Location: 219105 - 220052 (-)
Type: TC
Location: 219105 - 220052 (-)
Gene ID: A103_contig_341_183
Type: TC
Location: 220066 - 220992 (-)
Type: TC
Location: 220066 - 220992 (-)
Gene ID: A103_contig_341_184
Type: pfam
Location: 221282 - 222412 (+)
Type: pfam
Location: 221282 - 222412 (+)
Gene ID: A103_contig_341_185
Type: peptidase
Location: 222473 - 223702 (+)
Type: peptidase
Location: 222473 - 223702 (+)
Gene ID: A103_contig_341_186
Type: TC
Location: 223738 - 224532 (+)
Type: TC
Location: 223738 - 224532 (+)
Gene ID: A103_contig_341_187
Type: pfam
Location: 224609 - 225385 (-)
Type: pfam
Location: 224609 - 225385 (-)
Gene ID: A103_contig_341_188
Type: CAZyme
Location: 225527 - 227029 (-)
Type: CAZyme
Location: 225527 - 227029 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A103_contig_341_182 | vegetarian > vegan | 1.48725 | 0.01591 |
| A103_contig_341_185 | vegetarian > vegan | 1.03855 | 0.01591 |
| A103_contig_341_186 | vegetarian > vegan | 1.21405 | 0.01591 |