Cluster: A103.bin_16_CGC27
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: A103.bin_16
- CGC Family ID: CGCFAM_04209
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A103_contig_341 | A103_contig_341_164 | 194557 | 196362 | - | GH2 |
| TF | A103_contig_341 | A103_contig_341_165 | 196508 | 197536 | - | LacI |
| CAZyme | A103_contig_341 | A103_contig_341_166 | 197725 | 199236 | - | GH51_1 |
| TC | A103_contig_341 | A103_contig_341_167 | 199314 | 200144 | - | 3.A.1.1.36 |
| TC | A103_contig_341 | A103_contig_341_168 | 200141 | 201055 | - | 3.A.1.1.36 |
| TC | A103_contig_341 | A103_contig_341_169 | 201249 | 202505 | - | 3.A.1.1.40 |
| TC | A103_contig_341 | A103_contig_341_170 | 203924 | 205327 | + | 2.A.86.1.11 |
Gene ID: A103_contig_341_164
Type: CAZyme
Location: 194557 - 196362 (-)
Type: CAZyme
Location: 194557 - 196362 (-)
Gene ID: A103_contig_341_165
Type: TF
Location: 196508 - 197536 (-)
Type: TF
Location: 196508 - 197536 (-)
Gene ID: A103_contig_341_166
Type: CAZyme
Location: 197725 - 199236 (-)
Type: CAZyme
Location: 197725 - 199236 (-)
Gene ID: A103_contig_341_167
Type: TC
Location: 199314 - 200144 (-)
Type: TC
Location: 199314 - 200144 (-)
Gene ID: A103_contig_341_168
Type: TC
Location: 200141 - 201055 (-)
Type: TC
Location: 200141 - 201055 (-)
Gene ID: A103_contig_341_169
Type: TC
Location: 201249 - 202505 (-)
Type: TC
Location: 201249 - 202505 (-)
Gene ID: A103_contig_341_170
Type: TC
Location: 203924 - 205327 (+)
Type: TC
Location: 203924 - 205327 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A103_contig_341_166 | vegetarian > vegan | 1.26605 | 0.01591 |
| A103_contig_341_167 | vegetarian > vegan | 1.22022 | 0.01591 |
| A103_contig_341_169 | vegetarian > omnivore | 1.15035 | 0.04774 |
| A103_contig_341_169 | vegetarian > vegan | 1.24278 | 0.01591 |