Cluster: A103.bin_16_CGC24
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: A103.bin_16
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A103_contig_341 | A103_contig_341_71 | 86125 | 87639 | - | GH77 |
| TF | A103_contig_341 | A103_contig_341_72 | 87833 | 88876 | - | LacI |
| CAZyme | A103_contig_341 | A103_contig_341_73 | 88949 | 89722 | - | GH31_3 |
| CAZyme | A103_contig_341 | A103_contig_341_74 | 89694 | 91253 | - | GH31_3 |
| CAZyme | A103_contig_341 | A103_contig_341_75 | 91307 | 92125 | - | CE1 |
| TC | A103_contig_341 | A103_contig_341_76 | 92139 | 92975 | - | 3.A.1.1.45 |
| TC | A103_contig_341 | A103_contig_341_77 | 92977 | 93822 | - | 3.A.1.1.45 |
| TC | A103_contig_341 | A103_contig_341_78 | 93988 | 95349 | - | 3.A.1.1.45 |
| TC | A103_contig_341 | A103_contig_341_79 | 95508 | 96881 | - | 2.A.66.1.33 |
| pfam | A103_contig_341 | A103_contig_341_80 | 97610 | 98815 | + | Amidohydro_2 |
| CAZyme | A103_contig_341 | A103_contig_341_81 | 99108 | 101021 | - | GH146 |
| TC | A103_contig_341 | A103_contig_341_82 | 101048 | 101881 | - | 3.A.1.1.4 |
| TC | A103_contig_341 | A103_contig_341_83 | 101893 | 102786 | - | 3.A.1.1.20 |
Gene ID: A103_contig_341_71
Type: CAZyme
Location: 86125 - 87639 (-)
Type: CAZyme
Location: 86125 - 87639 (-)
Gene ID: A103_contig_341_72
Type: TF
Location: 87833 - 88876 (-)
Type: TF
Location: 87833 - 88876 (-)
Gene ID: A103_contig_341_73
Type: CAZyme
Location: 88949 - 89722 (-)
Type: CAZyme
Location: 88949 - 89722 (-)
Gene ID: A103_contig_341_74
Type: CAZyme
Location: 89694 - 91253 (-)
Type: CAZyme
Location: 89694 - 91253 (-)
Gene ID: A103_contig_341_75
Type: CAZyme
Location: 91307 - 92125 (-)
Type: CAZyme
Location: 91307 - 92125 (-)
Gene ID: A103_contig_341_76
Type: TC
Location: 92139 - 92975 (-)
Type: TC
Location: 92139 - 92975 (-)
Gene ID: A103_contig_341_77
Type: TC
Location: 92977 - 93822 (-)
Type: TC
Location: 92977 - 93822 (-)
Gene ID: A103_contig_341_78
Type: TC
Location: 93988 - 95349 (-)
Type: TC
Location: 93988 - 95349 (-)
Gene ID: A103_contig_341_79
Type: TC
Location: 95508 - 96881 (-)
Type: TC
Location: 95508 - 96881 (-)
Gene ID: A103_contig_341_80
Type: pfam
Location: 97610 - 98815 (+)
Type: pfam
Location: 97610 - 98815 (+)
Gene ID: A103_contig_341_81
Type: CAZyme
Location: 99108 - 101021 (-)
Type: CAZyme
Location: 99108 - 101021 (-)
Gene ID: A103_contig_341_82
Type: TC
Location: 101048 - 101881 (-)
Type: TC
Location: 101048 - 101881 (-)
Gene ID: A103_contig_341_83
Type: TC
Location: 101893 - 102786 (-)
Type: TC
Location: 101893 - 102786 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A103_contig_341_72 | vegetarian > vegan | 1.92632 | 0.01591 |
| A103_contig_341_74 | vegetarian > vegan | 1.64831 | 0.01591 |
| A103_contig_341_79 | vegetarian > vegan | 1.05880 | 0.01591 |
| A103_contig_341_82 | vegetarian > vegan | 1.26501 | 0.01591 |
| A103_contig_341_83 | vegetarian > vegan | 1.61132 | 0.01591 |