Cluster: A103.bin_16_CGC21
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: A103.bin_16
- CGC Family ID: CGCFAM_00009
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A103_contig_2645 | A103_contig_2645_286 | 326534 | 327499 | - | GT2 |
| pfam | A103_contig_2645 | A103_contig_2645_287 | 327512 | 328912 | - | LytR_cpsA_psr |
| TC | A103_contig_2645 | A103_contig_2645_288 | 328947 | 330347 | - | 9.B.18.1.1 |
| CAZyme | A103_contig_2645 | A103_contig_2645_289 | 330363 | 331322 | - | GT2 |
| CAZyme | A103_contig_2645 | A103_contig_2645_290 | 331329 | 333155 | - | GT2 | GT2 |
| STP | A103_contig_2645 | A103_contig_2645_291 | 333145 | 334275 | - | Aminotran_1_2 |
| NULL(UNKNOWN) | A103_contig_2645 | A103_contig_2645_292 | 334305 | 336032 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A103_contig_2645 | A103_contig_2645_293 | 336129 | 338639 | - | GT2 | GT2 |
| CAZyme | A103_contig_2645 | A103_contig_2645_294 | 338769 | 340910 | - | GT2 | GT2 |
| NULL(UNKNOWN) | A103_contig_2645 | A103_contig_2645_295 | 340974 | 342221 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A103_contig_2645 | A103_contig_2645_296 | 342218 | 343144 | - | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| TC | A103_contig_2645 | A103_contig_2645_297 | 343156 | 344442 | - | 3.A.1.103.6 |
| TC | A103_contig_2645 | A103_contig_2645_298 | 344565 | 345377 | - | 3.A.1.104.1 |
Gene ID: A103_contig_2645_286
Type: CAZyme
Location: 326534 - 327499 (-)
Type: CAZyme
Location: 326534 - 327499 (-)
Gene ID: A103_contig_2645_287
Type: pfam
Location: 327512 - 328912 (-)
Type: pfam
Location: 327512 - 328912 (-)
Gene ID: A103_contig_2645_288
Type: TC
Location: 328947 - 330347 (-)
Type: TC
Location: 328947 - 330347 (-)
Gene ID: A103_contig_2645_289
Type: CAZyme
Location: 330363 - 331322 (-)
Type: CAZyme
Location: 330363 - 331322 (-)
Gene ID: A103_contig_2645_290
Type: CAZyme
Location: 331329 - 333155 (-)
Type: CAZyme
Location: 331329 - 333155 (-)
Gene ID: A103_contig_2645_291
Type: STP
Location: 333145 - 334275 (-)
Type: STP
Location: 333145 - 334275 (-)
Gene ID: A103_contig_2645_292
Type:
Location: 334305 - 336032 (-)
Type:
Location: 334305 - 336032 (-)
Gene ID: A103_contig_2645_293
Type: CAZyme
Location: 336129 - 338639 (-)
Type: CAZyme
Location: 336129 - 338639 (-)
Gene ID: A103_contig_2645_294
Type: CAZyme
Location: 338769 - 340910 (-)
Type: CAZyme
Location: 338769 - 340910 (-)
Gene ID: A103_contig_2645_295
Type:
Location: 340974 - 342221 (-)
Type:
Location: 340974 - 342221 (-)
Gene ID: A103_contig_2645_296
Type: pfam
Location: 342218 - 343144 (-)
Type: pfam
Location: 342218 - 343144 (-)
Gene ID: A103_contig_2645_297
Type: TC
Location: 343156 - 344442 (-)
Type: TC
Location: 343156 - 344442 (-)
Gene ID: A103_contig_2645_298
Type: TC
Location: 344565 - 345377 (-)
Type: TC
Location: 344565 - 345377 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A103_contig_2645_287 | vegetarian > vegan | 1.13368 | 0.01591 |
| A103_contig_2645_289 | vegetarian > vegan | 1.55637 | 0.01591 |
| A103_contig_2645_292 | vegetarian > vegan | 1.28814 | 0.01591 |