Cluster: A103.bin_16_CGC15
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: A103.bin_16
- CGC Family ID: CGCFAM_06483
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A103_contig_733 | A103_contig_733_218 | 231052 | 232488 | + | 3.B.1.1.2 |
| pfam | A103_contig_733 | A103_contig_733_219 | 232503 | 233390 | + | OAD_gamma |
| TC | A103_contig_733 | A103_contig_733_220 | 233409 | 233786 | + | 3.B.1.1.2 |
| TC | A103_contig_733 | A103_contig_733_221 | 233835 | 234992 | + | 3.B.1.1.3 |
| TC | A103_contig_733 | A103_contig_733_222 | 235118 | 236530 | + | 3.B.1.1.6 |
| pfam | A103_contig_733 | A103_contig_733_223 | 236813 | 237475 | + | TPK_catalytic | TPK_B1_binding |
| NULL(UNKNOWN) | A103_contig_733 | A103_contig_733_224 | 237603 | 238001 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A103_contig_733 | A103_contig_733_225 | 238056 | 238964 | + | 3.A.1.3.2 |
| TC | A103_contig_733 | A103_contig_733_226 | 239130 | 239915 | + | 3.A.1.3.15 |
| TC | A103_contig_733 | A103_contig_733_227 | 239899 | 240675 | + | 3.A.1.3.25 |
| peptidase | A103_contig_733 | A103_contig_733_228 | 240706 | 242148 | + | M20.UND |
| CAZyme | A103_contig_733 | A103_contig_733_229 | 242442 | 243833 | + | GH25 |
Gene ID: A103_contig_733_218
Type: TC
Location: 231052 - 232488 (+)
Type: TC
Location: 231052 - 232488 (+)
Gene ID: A103_contig_733_219
Type: pfam
Location: 232503 - 233390 (+)
Type: pfam
Location: 232503 - 233390 (+)
Gene ID: A103_contig_733_220
Type: TC
Location: 233409 - 233786 (+)
Type: TC
Location: 233409 - 233786 (+)
Gene ID: A103_contig_733_221
Type: TC
Location: 233835 - 234992 (+)
Type: TC
Location: 233835 - 234992 (+)
Gene ID: A103_contig_733_222
Type: TC
Location: 235118 - 236530 (+)
Type: TC
Location: 235118 - 236530 (+)
Gene ID: A103_contig_733_223
Type: pfam
Location: 236813 - 237475 (+)
Type: pfam
Location: 236813 - 237475 (+)
Gene ID: A103_contig_733_224
Type:
Location: 237603 - 238001 (+)
Type:
Location: 237603 - 238001 (+)
Gene ID: A103_contig_733_225
Type: TC
Location: 238056 - 238964 (+)
Type: TC
Location: 238056 - 238964 (+)
Gene ID: A103_contig_733_226
Type: TC
Location: 239130 - 239915 (+)
Type: TC
Location: 239130 - 239915 (+)
Gene ID: A103_contig_733_227
Type: TC
Location: 239899 - 240675 (+)
Type: TC
Location: 239899 - 240675 (+)
Gene ID: A103_contig_733_228
Type: peptidase
Location: 240706 - 242148 (+)
Type: peptidase
Location: 240706 - 242148 (+)
Gene ID: A103_contig_733_229
Type: CAZyme
Location: 242442 - 243833 (+)
Type: CAZyme
Location: 242442 - 243833 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Choladousia
Species
Choladousia sp902363135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A103_contig_733_219 | vegetarian > vegan | 1.27470 | 0.01591 |
| A103_contig_733_223 | vegetarian > vegan | 1.78889 | 0.01591 |
| A103_contig_733_224 | vegetarian > vegan | 2.64804 | 0.01591 |