Cluster: A10.bin_10_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: A10.bin_10
- CGC Family ID: CGCFAM_01246
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A10_contig_2278 | A10_contig_2278_9 | 6462 | 7085 | - | 2.A.115.2.14 |
| CAZyme | A10_contig_2278 | A10_contig_2278_10 | 7349 | 8869 | + | GH77 |
| CAZyme | A10_contig_2278 | A10_contig_2278_11 | 8876 | 11140 | + | GT35 |
| pfam | A10_contig_2278 | A10_contig_2278_12 | 11326 | 12090 | + | HlyD_3 |
| pfam | A10_contig_2278 | A10_contig_2278_13 | 12136 | 12954 | + | HlyD_3 | HlyD_D23 |
| TC | A10_contig_2278 | A10_contig_2278_14 | 12966 | 13712 | + | 3.A.1.122.2 |
| TC | A10_contig_2278 | A10_contig_2278_15 | 13709 | 14899 | + | 3.A.1.122.2 |
Gene ID: A10_contig_2278_9
Type: TC
Location: 6462 - 7085 (-)
Type: TC
Location: 6462 - 7085 (-)
Gene ID: A10_contig_2278_10
Type: CAZyme
Location: 7349 - 8869 (+)
Type: CAZyme
Location: 7349 - 8869 (+)
Gene ID: A10_contig_2278_11
Type: CAZyme
Location: 8876 - 11140 (+)
Type: CAZyme
Location: 8876 - 11140 (+)
Gene ID: A10_contig_2278_12
Type: pfam
Location: 11326 - 12090 (+)
Type: pfam
Location: 11326 - 12090 (+)
Gene ID: A10_contig_2278_13
Type: pfam
Location: 12136 - 12954 (+)
Type: pfam
Location: 12136 - 12954 (+)
Gene ID: A10_contig_2278_14
Type: TC
Location: 12966 - 13712 (+)
Type: TC
Location: 12966 - 13712 (+)
Gene ID: A10_contig_2278_15
Type: TC
Location: 13709 - 14899 (+)
Type: TC
Location: 13709 - 14899 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Lawsonibacter
Species
Lawsonibacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A10_contig_2278_12 | vegetarian > vegan | 1.07990 | 0.00385 |