Cluster: A10.bin_10_CGC2
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: A10.bin_10
- CGC Family ID: CGCFAM_00085
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A10_contig_2149 | A10_contig_2149_29 | 30435 | 32489 | + | 3.A.23.1.1 |
| STP | A10_contig_2149 | A10_contig_2149_30 | 32670 | 33653 | + | PALP |
| TC | A10_contig_2149 | A10_contig_2149_31 | 33758 | 35224 | + | 2.A.35.1.2 |
| pfam | A10_contig_2149 | A10_contig_2149_32 | 35305 | 35679 | + | Ribonuc_L-PSP |
| TC | A10_contig_2149 | A10_contig_2149_33 | 35736 | 37370 | - | 4.C.1.1.6 |
| NULL(UNKNOWN) | A10_contig_2149 | A10_contig_2149_34 | 37606 | 37746 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A10_contig_2149 | A10_contig_2149_35 | 38119 | 40329 | - | GT4 |
| pfam | A10_contig_2149 | A10_contig_2149_36 | 40351 | 40845 | - | DUF4330 |
| pfam | A10_contig_2149 | A10_contig_2149_37 | 40842 | 41345 | - | DUF4330 |
| CAZyme | A10_contig_2149 | A10_contig_2149_38 | 41342 | 42466 | - | GT4 |
| TC | A10_contig_2149 | A10_contig_2149_39 | 42463 | 43923 | - | 9.B.67.1.1 |
| TC | A10_contig_2149 | A10_contig_2149_40 | 43995 | 45551 | - | 2.A.66.4.7 |
Gene ID: A10_contig_2149_29
Type: TC
Location: 30435 - 32489 (+)
Type: TC
Location: 30435 - 32489 (+)
Gene ID: A10_contig_2149_30
Type: STP
Location: 32670 - 33653 (+)
Type: STP
Location: 32670 - 33653 (+)
Gene ID: A10_contig_2149_31
Type: TC
Location: 33758 - 35224 (+)
Type: TC
Location: 33758 - 35224 (+)
Gene ID: A10_contig_2149_32
Type: pfam
Location: 35305 - 35679 (+)
Type: pfam
Location: 35305 - 35679 (+)
Gene ID: A10_contig_2149_33
Type: TC
Location: 35736 - 37370 (-)
Type: TC
Location: 35736 - 37370 (-)
Gene ID: A10_contig_2149_34
Type:
Location: 37606 - 37746 (-)
Type:
Location: 37606 - 37746 (-)
Gene ID: A10_contig_2149_35
Type: CAZyme
Location: 38119 - 40329 (-)
Type: CAZyme
Location: 38119 - 40329 (-)
Gene ID: A10_contig_2149_36
Type: pfam
Location: 40351 - 40845 (-)
Type: pfam
Location: 40351 - 40845 (-)
Gene ID: A10_contig_2149_37
Type: pfam
Location: 40842 - 41345 (-)
Type: pfam
Location: 40842 - 41345 (-)
Gene ID: A10_contig_2149_38
Type: CAZyme
Location: 41342 - 42466 (-)
Type: CAZyme
Location: 41342 - 42466 (-)
Gene ID: A10_contig_2149_39
Type: TC
Location: 42463 - 43923 (-)
Type: TC
Location: 42463 - 43923 (-)
Gene ID: A10_contig_2149_40
Type: TC
Location: 43995 - 45551 (-)
Type: TC
Location: 43995 - 45551 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Lawsonibacter
Species
Lawsonibacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A10_contig_2149_29 | vegetarian > omnivore | 1.26157 | 0.00665 |
| A10_contig_2149_29 | vegetarian > vegan | 1.58276 | 0.00385 |
| A10_contig_2149_31 | vegetarian > omnivore | 1.28353 | 0.00665 |
| A10_contig_2149_31 | vegetarian > vegan | 1.05105 | 0.00385 |
| A10_contig_2149_40 | vegetarian > vegan | 1.10994 | 0.00385 |