Seed protein information help

APIS family ID APIS045
Inhibited defense system
CLAN ID CLAN001
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300005805_000580|3300005805|Ga0079957_100145420
gene_page: 115 12473.3 5.6105 -1.5
Phage property
Phage Assembly id
PMID/References
PDB structures ;
Pfam domains PF11195.11
Phrog phrog_30130,phrog_872,phrog_1048
Host taxa
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029,APIS211,APIS245,APIS283,APIS315,APIS356,APIS372,APIS373,APIS378 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.73 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

Structure homologs against by esmdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
MGYP003602489207.pdb 19 115 1 94 0.911 0.8141
MGYP001502806657.pdb 19 115 1 93 0.9011 0.803
MGYP003370295980.pdb 23 115 1 94 0.8961 0.7989
MGYP001606264746.pdb 19 115 1 92 0.8993 0.7952
MGYP003299292040.pdb 19 115 1 94 0.8821 0.7868
MGYP000384891912.pdb 23 115 1 92 0.8905 0.7867
MGYP001616459512.pdb 23 115 1 84 0.9149 0.781
MGYP000611009890.pdb 18 115 1 96 0.873 0.7805
MGYP000506228510.pdb 19 115 1 94 0.8728 0.779
MGYP003299842018.pdb 19 115 1 97 0.8585 0.7777

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS045 IMGVR_UViG_3300005805_000580|3300005805|Ga0079957_100145420 5 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       download full data without filtering help

Clan ID: CLAN001

Hit APIS family E-Value Query Start Query End Hit Start Hit End Immune system Seed protein
APIS029 2.46E-31 20 115 15 101 Thoeris YP_002300464.1
APIS052 1.03E-25 19 115 73 162 - IMGVR_UViG_3300012991_000489|3300012991|Ga0157148_10003866
APIS079 4.67E-24 20 115 85 171 - MF042361_00008
APIS043 3.38E-22 21 115 120 208 - MH238467_00052