Seed protein information help

APIS family ID APIS045
Inhibited defense system
CLAN ID CLAN023
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300005805_000580|3300005805|Ga0079957_100145420
gene_page: 115 12473.33 5.6105 -1.5
Phage property
Phage Assembly id
PMID/References
PDB structures ;
Pfam domains PF11195.11
Phrog phrog_30130,phrog_872,phrog_1048
Host taxa
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.73 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

Structure homologs against by esmdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
MGYP003602489207.pdb 19 115 1 94 0.911 0.8141
MGYP001502806657.pdb 19 115 1 93 0.9011 0.803
MGYP003370295980.pdb 23 115 1 94 0.8961 0.7989
MGYP001606264746.pdb 19 115 1 92 0.8993 0.7952
MGYP003299292040.pdb 19 115 1 94 0.8821 0.7868
MGYP000384891912.pdb 23 115 1 92 0.8905 0.7867
MGYP001616459512.pdb 23 115 1 84 0.9149 0.781
MGYP000611009890.pdb 18 115 1 96 0.873 0.7805
MGYP000506228510.pdb 19 115 1 94 0.8728 0.779
MGYP003299842018.pdb 19 115 1 97 0.8585 0.7777

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS045 IMGVR_UViG_3300005805_000580|3300005805|Ga0079957_100145420 5 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       download full data without filtering help

Clan ID: CLAN023

Hit APIS family E-Value Query Start Query End Hit Start Hit End Immune system Seed protein
APIS029 2.46E-31 20 115 15 101 Thoeris YP_002300464.1
APIS052 1.03E-25 19 115 73 162 - IMGVR_UViG_3300012991_000489|3300012991|Ga0157148_10003866
APIS079 4.67E-24 20 115 85 171 - MF042361_00008
APIS043 3.38E-22 21 115 120 208 - MH238467_00052