y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g005706m |
Family | PL4 |
Protein Properties | Length: 683 Molecular Weight: 77557.5 Isoelectric Point: 6.4661 |
Chromosome | Chromosome/Scaffold: 00004 Start: 2590298 End: 2596955 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 54 | 665 | 0 |
TQAVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFRVVVENEEQVELSFLRTWASSHEG NYIPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDD KYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLW EDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVP GFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKD WFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGEN TIFLKQPRCTSP |
Full Sequence |
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Protein Sequence Length: 683 Download |
MKKRLQRIAD FLGSCDCGTC TNQVAEGISG CLKPRGSHGG DQVLQNSTWP AMPTQAVRLH 60 IKDHHVVLDN GILQVTLSKP GGIVTGIRYN GIDNLLEFRN KETNRGYWDL MWNPPGGKGM 120 FDVISGTSFR VVVENEEQVE LSFLRTWASS HEGNYIPLNI DKRFIMLRGS SGFYSYAIYE 180 HLKEWPAFTL GQTRFTFKLR KEKFRYMVIA DNRHRQMPLP EDLSTGRGQP LAYPEAVQLV 240 NPTDPEHQGE VDDKYQYSCE NKDLKVHGWI CRTTPVGFWL IIPSDEFRSG GPLKQNLTSH 300 VGPTTLAVFL SGHYAGKYME THIGQDEPWK KVFGPVFIYL NSAADGDDPL WLWEDAKIKM 360 MSEVQSWPYN FPASEDFQKS EERGCVSGRL LVQDSNDVIS ANGAYVGLAP PGDVGSWQTE 420 CKDYQFWTTA DEDGCFSIKN IRTGNYNLYA WVPGFVGDYR SDALVTITSG SNIKMGDLVY 480 EPPRDGPTLW EIGIPDRSAR EFNVPDPDPK YVNRLFVNHP DRFRQYGLWS RYTELYPNED 540 LVYTIGVSDY SKDWFFAQVV REMDNKTYQG TTWQIKFKLD HVDRNSSYKL RVAIASATLA 600 ELQVRVNDPN ANRPLFTTGL IGRDNAIARH GIHGLYLLYH VNIPGTRFIE GENTIFLKQP 660 RCTSPFQGIM YDYIRLEGPP VS* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.001 | 428 | 472 | 45 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 2.0e-34 | 382 | 478 | 97 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 3.0e-53 | 490 | 677 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-77 | 65 | 343 | 285 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-101 | 45 | 251 | 207 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 52 | 680 | 1 | 645 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_172462.2 | 0 | 3 | 680 | 7 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002285626.1 | 0 | 68 | 680 | 1 | 616 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002306520.1 | 0 | 68 | 680 | 1 | 616 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 52 | 679 | 1 | 631 | lyase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nkg_A | 0.007 | 425 | 658 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
PDB | 3njx_A | 0.008 | 425 | 658 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 3njv_A | 0.008 | 425 | 658 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 2xhn_B | 0.008 | 425 | 658 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 2xhn_A | 0.008 | 425 | 658 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DN958019 | 275 | 1 | 275 | 0 |
EY731293 | 263 | 145 | 407 | 0 |
CX674003 | 246 | 1 | 246 | 0 |
EY792839 | 236 | 325 | 557 | 0 |
EY842989 | 242 | 250 | 487 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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