y
Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_21.45 |
Family | PL4 |
Protein Properties | Length: 628 Molecular Weight: 71706.7 Isoelectric Point: 4.6531 |
Chromosome | Chromosome/Scaffold: 21 Start: 637041 End: 640743 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 1 | 604 | 0 |
MDNGILQVTISKPDGIVTGIEYNGMDNLLEVRNEEDNRGYWDLVWSQEGATGTTGISYVIRGTSFKVIMESEGQVEISFSRTWDPSVDNGQLAPLNIDKR FIMLRDCSGFYSYAIYEHLKDWPAFNLPQTRIVFKLRKNKFQYMVMADNRQRHMPLPEDRLPGRGRPLAYPEAVLLVHPVEPEFQGEVVDDKYQYSCENK DLKVHGWICFKKPITGFWQITPSNEFRSGGLLKQNLTSHVGPITLAMFLSAHYAGEDMVLKFKAGEAWKKVFGPVFIYLNSLLDNSYDPLSLWEDAKQQA SVEAQMWPYDFPVSEDFLSSDQRGNVTGRLYVFDRYISDEYITSDGAFVGLAPPGDVGSWQTESKGYQFWTSVDSGGYFMINDVRPGDYNLYAWVSGFIG DYKYETLITITSGCDTDLGNLVYYPPRDGPTLWEIGIPDRSAAEFYVPDPNPMFINKLYINHPDKFRQYGLWERYTELYPNEDLVYTIGDGDYTKDWFFA HLPRKKDGGENEATTWQIKFKLNSAEQTGVYKLRLALATANNANLEVRVRDKNSNPPLFSTDIVGHDNTIARHGIHGLYRLYNVDIPCEMFIEGDNTIFL TQTM |
Full Sequence |
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Protein Sequence Length: 628 Download |
MDNGILQVTI SKPDGIVTGI EYNGMDNLLE VRNEEDNRGY WDLVWSQEGA TGTTGISYVI 60 RGTSFKVIME SEGQVEISFS RTWDPSVDNG QLAPLNIDKR FIMLRDCSGF YSYAIYEHLK 120 DWPAFNLPQT RIVFKLRKNK FQYMVMADNR QRHMPLPEDR LPGRGRPLAY PEAVLLVHPV 180 EPEFQGEVVD DKYQYSCENK DLKVHGWICF KKPITGFWQI TPSNEFRSGG LLKQNLTSHV 240 GPITLAMFLS AHYAGEDMVL KFKAGEAWKK VFGPVFIYLN SLLDNSYDPL SLWEDAKQQA 300 SVEAQMWPYD FPVSEDFLSS DQRGNVTGRL YVFDRYISDE YITSDGAFVG LAPPGDVGSW 360 QTESKGYQFW TSVDSGGYFM INDVRPGDYN LYAWVSGFIG DYKYETLITI TSGCDTDLGN 420 LVYYPPRDGP TLWEIGIPDR SAAEFYVPDP NPMFINKLYI NHPDKFRQYG LWERYTELYP 480 NEDLVYTIGD GDYTKDWFFA HLPRKKDGGE NEATTWQIKF KLNSAEQTGV YKLRLALATA 540 NNANLEVRVR DKNSNPPLFS TDIVGHDNTI ARHGIHGLYR LYNVDIPCEM FIEGDNTIFL 600 TQTMCSDLFQ GVMYDYIRLE GPPISSS* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 5.0e-31 | 322 | 421 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-38 | 433 | 620 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-70 | 1 | 281 | 284 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-93 | 1 | 188 | 188 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_567703.4 | 0 | 1 | 626 | 18 | 643 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002285626.1 | 0 | 1 | 627 | 1 | 620 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301114.1 | 0 | 1 | 627 | 17 | 636 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 1 | 626 | 17 | 637 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 1 | 627 | 17 | 639 | lyase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3njx_A | 0.001 | 368 | 600 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 3njv_A | 0.001 | 368 | 600 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 2xhn_B | 0.001 | 368 | 600 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 2xhn_A | 0.001 | 368 | 600 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 1nkg_A | 0.001 | 368 | 600 | 283 | 483 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY293973 | 337 | 1 | 335 | 0 |
DT552229 | 296 | 1 | 296 | 0 |
DW479600 | 283 | 2 | 284 | 0 |
DW479599 | 282 | 1 | 282 | 0 |
FC896579 | 287 | 53 | 337 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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