y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr3g111420.1 |
Family | PL4 |
Protein Properties | Length: 716 Molecular Weight: 82266.6 Isoelectric Point: 6.6511 |
Chromosome | Chromosome/Scaffold: 3 Start: 40336351 End: 40343220 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 23 | 698 | 0 |
GVRLHIQQNYVVMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGSKGIFDVYANTTFFCYYLDESFAIIWPCQILNNDIFKSI HQLEFTIKVGVTGFFYFFLFFLSHLNININQIKGTCFEVIVQNEDQVELSFKRTWDPSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLPRWPDFDISE TRITFKLRKDKFQYMAMADDRRRIMPFPEDRLPGRCQPLAYQEAVLLVNPKDPQLKGEVDDKYQYSCKNIDNRVHGWISFNPPVGFWQITPSDEFRSGGP LKQNLTSHVGPTTLAMFLSGHYAGQDLVPKIRGGEPWKKVFGPVYIYLNSGPTGYDPLWLWEDAKIKMMTEVQSWPYLFPASEDFLKPDQRGNVSGRLLV LDRYISTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADMNGFFTINNVRPGDYNLFAWVPGFIGDYRFGDFVKITSGSYIELGELVYEPPRDGPTL WEIGIPDRSAAEFYAPDPNPQHINKLFINHPDRFRQYGLWDRYTELYPDADLVYTIGVSDYRKDWFYAQVPRKKADNTLEGTTWQIKFELSGVIQGATYK LRVAIASATLAELQIRVNDPNARRPVFTTGLIGRENSIARLGIHGLYWLYHVNIPSSLLIDGTNTIFFTQPRCTSP |
Full Sequence |
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Protein Sequence Length: 716 Download |
MISRFLAHRK KNKEDGFTMS APGVRLHIQQ NYVVMDNGIV QVTLSNPDGI VTGIRYNGVD 60 NLLEVLNKET NRGYWDLVWS APGSKGIFDV YANTTFFCYY LDESFAIIWP CQILNNDIFK 120 SIHQLEFTIK VGVTGFFYFF LFFLSHLNIN INQIKGTCFE VIVQNEDQVE LSFKRTWDPS 180 LEGKFVPLNI DKRFILLRGS SGFYSYGIYE HLPRWPDFDI SETRITFKLR KDKFQYMAMA 240 DDRRRIMPFP EDRLPGRCQP LAYQEAVLLV NPKDPQLKGE VDDKYQYSCK NIDNRVHGWI 300 SFNPPVGFWQ ITPSDEFRSG GPLKQNLTSH VGPTTLAMFL SGHYAGQDLV PKIRGGEPWK 360 KVFGPVYIYL NSGPTGYDPL WLWEDAKIKM MTEVQSWPYL FPASEDFLKP DQRGNVSGRL 420 LVLDRYISTD LISANGAYVG LAPPGDAGSW QRECKDYQFW TRADMNGFFT INNVRPGDYN 480 LFAWVPGFIG DYRFGDFVKI TSGSYIELGE LVYEPPRDGP TLWEIGIPDR SAAEFYAPDP 540 NPQHINKLFI NHPDRFRQYG LWDRYTELYP DADLVYTIGV SDYRKDWFYA QVPRKKADNT 600 LEGTTWQIKF ELSGVIQGAT YKLRVAIASA TLAELQIRVN DPNARRPVFT TGLIGRENSI 660 ARLGIHGLYW LYHVNIPSSL LIDGTNTIFF TQPRCTSPFQ GFMYDYIRLE GPPCF* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam06045 | Rhamnogal_lyase | 3.0e-29 | 19 | 112 | 99 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10316 | RGL4_M | 1.0e-31 | 412 | 511 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 3.0e-53 | 523 | 710 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 8.0e-65 | 151 | 281 | 131 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10320 | RGL4_N | 2.0e-66 | 24 | 375 | 352 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 19 | 714 | 1 | 646 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 35 | 714 | 1 | 617 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 35 | 711 | 1 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 154 | 712 | 73 | 631 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 19 | 714 | 1 | 635 | lyase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nkg_A | 0.0005 | 458 | 688 | 283 | 481 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
PDB | 3njx_A | 0.0005 | 458 | 688 | 283 | 481 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 3njv_A | 0.0005 | 458 | 688 | 283 | 481 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 2xhn_B | 0.0005 | 458 | 688 | 283 | 481 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 2xhn_A | 0.0005 | 458 | 688 | 283 | 481 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |