y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr5g031170.1 |
Family | PL4 |
Protein Properties | Length: 702 Molecular Weight: 79371.8 Isoelectric Point: 9.7728 |
Chromosome | Chromosome/Scaffold: 5 Start: 12939178 End: 12944684 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 49 | 675 | 0 |
NRQNSQQVVISNGIMSLTLANPGGYVLGISYAGMENVLEAGNEADDRGYFDVVFGKTFQRVHGTSFSVVTQNEHIVEVSFLRAWSSSMGVSSVPINIDQR YIVRKGDSGFYTYVVFERPKGFPAIKVDQIRTVFKPKEASFNYMAISDIRQRRMASMKDRDDGQKLAYPEAVLLTRPSNPQFKGEVDDKYQYSVENQYNQ VNGWITADSEKPVGFWIITPSNEFRNGGPVKQDLTSHVGPICLSVSSTHVMFVSTHYAGKDVAIQFQQGETHKKVFGPIFVYLNSAPSKDQFKSLWSDAK QKLSNELKSWPYNFIQSKDFIPPNQRGTLTGHLQVQDGGGKSQNAKNAYIGLALPGDAGSWQRESKGYQFWIRADQNGNFVIKNIVPGSYNLFAWVPGYI GDYKYNSPITIKPGGTINLNSLVYNPPRNGPTVWEIGIPDRSAGEFFVPKPYSNLLNRLFTNDIPDQLVSKPLSNNLTRFASTTSVPNYKFRQYGIWSRY SDLYPTQDLVYTVGVSNYRKDWFYAHVPRSTGNNKFQATTWKIIFEHGAVISGNYTLQLALASASNAEVQVWFNNMNANTPYFTTKRIGDDNAIPRHGIH GLYWLFTIEVPSIHLVKGKNTVFLRQS |
Full Sequence |
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Protein Sequence Length: 702 Download |
MNMSGRVLLL WWYIMALQLC FTFGSYLEYI SFRRSVRGLP NAQSSVTINR QNSQQVVISN 60 GIMSLTLANP GGYVLGISYA GMENVLEAGN EADDRGYFDV VFGKTFQRVH GTSFSVVTQN 120 EHIVEVSFLR AWSSSMGVSS VPINIDQRYI VRKGDSGFYT YVVFERPKGF PAIKVDQIRT 180 VFKPKEASFN YMAISDIRQR RMASMKDRDD GQKLAYPEAV LLTRPSNPQF KGEVDDKYQY 240 SVENQYNQVN GWITADSEKP VGFWIITPSN EFRNGGPVKQ DLTSHVGPIC LSVSSTHVMF 300 VSTHYAGKDV AIQFQQGETH KKVFGPIFVY LNSAPSKDQF KSLWSDAKQK LSNELKSWPY 360 NFIQSKDFIP PNQRGTLTGH LQVQDGGGKS QNAKNAYIGL ALPGDAGSWQ RESKGYQFWI 420 RADQNGNFVI KNIVPGSYNL FAWVPGYIGD YKYNSPITIK PGGTINLNSL VYNPPRNGPT 480 VWEIGIPDRS AGEFFVPKPY SNLLNRLFTN DIPDQLVSKP LSNNLTRFAS TTSVPNYKFR 540 QYGIWSRYSD LYPTQDLVYT VGVSNYRKDW FYAHVPRSTG NNKFQATTWK IIFEHGAVIS 600 GNYTLQLALA SASNAEVQVW FNNMNANTPY FTTKRIGDDN AIPRHGIHGL YWLFTIEVPS 660 IHLVKGKNTV FLRQSRFDSF WQGVLYDYIR LESPPTTKLK V* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.002 | 423 | 468 | 46 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 9.0e-32 | 373 | 470 | 98 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 4.0e-38 | 482 | 692 | 214 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 5.0e-63 | 55 | 234 | 187 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10320 | RGL4_N | 2.0e-67 | 52 | 339 | 299 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABY48149.1 | 0 | 1 | 539 | 3 | 535 | hypothetical protein [Medicago truncatula] |
RefSeq | NP_179847.1 | 0 | 45 | 694 | 51 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 12 | 697 | 17 | 674 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 56 | 697 | 1 | 620 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527245.1 | 0 | 56 | 697 | 2 | 621 | lyase, putative [Ricinus communis] |