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Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr3g111380.1 |
Family | PL4 |
Protein Properties | Length: 644 Molecular Weight: 73723.1 Isoelectric Point: 5.2132 |
Chromosome | Chromosome/Scaffold: 3 Start: 40315268 End: 40319102 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 17 | 622 | 0 |
VVIDNDIVQVNISNPEGCVTGIQYNGLDNLLEINNHESDRGYWDIVWDQGGEKRTKKGAKGKGKLDRLETTNMRVIMESEEQVELSFTRTWNLSLEGKLA PLNIDKRFIMLRGSSGFYTYAIYDHLKEWPAFDLDNTRVAFKFNYMAIADNRQRFMPLPDDRLPPRGQVLAYPEAVRLVNPVEPEFKGEVDDKYEYACES RSNQVHGWISIDSSSDSTGCWLITPSYEFRSAGPLKQYLGSHLGPTMLSVFHSTHYSGADLIMKFGENEPWKKVFGPIFIYLNSNSDGFSPIKLWEDAKQ QMVNEVESWPYTFPASEDFLSSAQRGKFEGRLLVRDRYIRDAFVPVSGAYVGLAAPGDVGSWQREYKGYQFWTITDDKGYFSIINVLPGDYNLYSWVNGF IGDYQCNNIINITSGSEINVGELVYEPPRHGPTLWEIGIPDRSAAEFYVPDPNPLYVNRLYVNHSDRFRQYGLWERYADLYPNEDLVYTVGISDYKKDWF FAQVTRKKDNNTYQGTTWRINFNLDSVNTKGTYKLRLALASVHYAELQIRINNLDATSPPLFSTGVIGKENTIARHGIHGLYWLYNIDVQGSLLVKGNNT IFLTQA |
Full Sequence |
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Protein Sequence Length: 644 Download |
MDFHNLFLFL MLQFILVVID NDIVQVNISN PEGCVTGIQY NGLDNLLEIN NHESDRGYWD 60 IVWDQGGEKR TKKGAKGKGK LDRLETTNMR VIMESEEQVE LSFTRTWNLS LEGKLAPLNI 120 DKRFIMLRGS SGFYTYAIYD HLKEWPAFDL DNTRVAFKFN YMAIADNRQR FMPLPDDRLP 180 PRGQVLAYPE AVRLVNPVEP EFKGEVDDKY EYACESRSNQ VHGWISIDSS SDSTGCWLIT 240 PSYEFRSAGP LKQYLGSHLG PTMLSVFHST HYSGADLIMK FGENEPWKKV FGPIFIYLNS 300 NSDGFSPIKL WEDAKQQMVN EVESWPYTFP ASEDFLSSAQ RGKFEGRLLV RDRYIRDAFV 360 PVSGAYVGLA APGDVGSWQR EYKGYQFWTI TDDKGYFSII NVLPGDYNLY SWVNGFIGDY 420 QCNNIINITS GSEINVGELV YEPPRHGPTL WEIGIPDRSA AEFYVPDPNP LYVNRLYVNH 480 SDRFRQYGLW ERYADLYPNE DLVYTVGISD YKKDWFFAQV TRKKDNNTYQ GTTWRINFNL 540 DSVNTKGTYK LRLALASVHY AELQIRINNL DATSPPLFST GVIGKENTIA RHGIHGLYWL 600 YNIDVQGSLL VKGNNTIFLT QATKDGPFVG ILYDYIRLEG PPT* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 9.0e-28 | 340 | 439 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-50 | 451 | 639 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 6.0e-53 | 29 | 303 | 282 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 8.0e-78 | 29 | 206 | 183 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 10 | 643 | 8 | 646 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 19 | 643 | 1 | 617 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002527353.1 | 0 | 10 | 643 | 8 | 635 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527356.1 | 0 | 17 | 642 | 128 | 747 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527356.1 | 0 | 84 | 206 | 1 | 128 | lyase, putative [Ricinus communis] |