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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna21961.1-v1.0-hybrid |
Family | AA7 |
Protein Properties | Length: 624 Molecular Weight: 69455.2 Isoelectric Point: 8.5193 |
Chromosome | Chromosome/Scaffold: 6 Start: 10775698 End: 10778662 |
Description | cytokinin oxidase/dehydrogenase 1 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 81 | 273 | 2.8e-27 |
VYHHLPSAVLYPKSVSDISSTIKLIFEMGSGSELTVAARGHGHSFHGQAQAHRGVVINMESLKGSPEMQVHLGQQPYVDVSGGELWINILHETLKHGLAP KSWTDYLHLTVGGTLSNAGISGQAFRHGPQINNVYQLEVVTGKGDIITCSGKQDPELFYAVLGGLGQFGIITKARISLQPAQKMVKWIRVLYS |
Full Sequence |
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Protein Sequence Length: 624 Download |
MESPPRSFHK QNNIVCLKLC LLLFMGCVPD TTNLSYSQFL DTPAIIPYNS SDMASPFQTL 60 SLDGYLSFDN NHHTAKDFGN VYHHLPSAVL YPKSVSDISS TIKLIFEMGS GSELTVAARG 120 HGHSFHGQAQ AHRGVVINME SLKGSPEMQV HLGQQPYVDV SGGELWINIL HETLKHGLAP 180 KSWTDYLHLT VGGTLSNAGI SGQAFRHGPQ INNVYQLEVV TGKGDIITCS GKQDPELFYA 240 VLGGLGQFGI ITKARISLQP AQKMVKWIRV LYSDFSLFSK DQELLISAEN SFDYIEGFVI 300 INRTGLLNNW RSSFNPKDPI QASQFNSDGK TLYCLEMAKY FNPEETDVMD QLKVRTSLRS 360 PPSGADDCAP PPQRPRSLSS PASPPNSSSP TRSPKTSNNI DLAGKLEFGG LAGEGKWSRT 420 LLESAGVEAG RRRRRTIIKI LLSKLQYIPS TLFTSEVSFV NFLERVHLSE IKLREKGLWE 480 VPHPWINLLI PKSKIHEFAE EVFGNILTDN INGPILMWNN KTSLVTPDED VFYLVAFLSS 540 VVPSSTGTDG FDKILTLNRR ILQYSATANL GIRQYLPHYR TQEEWRAHFG SQWKVFIQRK 600 SSYDPLAILA PGQRIFKKAV PII* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01565 | FAD_binding_4 | 3.0e-23 | 86 | 230 | 146 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
pfam09265 | Cytokin-bind | 7.0e-37 | 263 | 351 | 92 | + Cytokinin dehydrogenase 1, FAD and cytokinin binding. Members of this family adopt an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. They are predominantly found in plant cytokinin dehydrogenase 1, where they are capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin. | ||
pfam09265 | Cytokin-bind | 5.0e-80 | 438 | 616 | 187 | + Cytokinin dehydrogenase 1, FAD and cytokinin binding. Members of this family adopt an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. They are predominantly found in plant cytokinin dehydrogenase 1, where they are capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin. | ||
PLN02441 | PLN02441 | 2.0e-97 | 438 | 621 | 191 | + cytokinin dehydrogenase | ||
PLN02441 | PLN02441 | 0 | 10 | 351 | 350 | + cytokinin dehydrogenase |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0009690 | cytokinin metabolic process |
GO:0016491 | oxidoreductase activity |
GO:0019139 | cytokinin dehydrogenase activity |
GO:0050660 | flavin adenine dinucleotide binding |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2q4w_A | 0 | 74 | 620 | 50 | 524 | A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa D469a With Pnp-Beta-D-Glucosamine |
PDB | 2exr_A | 0 | 74 | 620 | 50 | 524 | A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 |
PDB | 3kjm_A | 0 | 42 | 304 | 5 | 278 | A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 |
PDB | 3kjm_A | 1e-35 | 441 | 617 | 335 | 516 | A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 |
PDB | 2qpm_A | 0 | 42 | 304 | 5 | 278 | A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With Benzylurea Inhibitor Cpbu |