y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb06g022930.1 |
Family | AA7 |
Protein Properties | Length: 531 Molecular Weight: 57259.8 Isoelectric Point: 5.4309 |
Chromosome | Chromosome/Scaffold: 6 Start: 52144807 End: 52149675 |
Description | cytokinin oxidase/dehydrogenase 6 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 51 | 250 | 2.6e-28 |
VVSEAPIAVMQPGSPADIARLLGALSSSSGPRVAARGAGHSLHGQAQARGGIVVETRALPRLVEVVRRGDSDGDGDGGYADVGGGALWVEVLEACLRAGL APRSWTDYLYLTVGGTLSNGGISGQAFKHGPQISNVLQLEVVTGTGEVVTCSPTQSPELFFAVLGGLGQFGVITRARIPLQLAPPKVRWVRAFYDSFETF |
Full Sequence |
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Protein Sequence Length: 531 Download |
MELNRVLYMY AGTVALLLCS AVNFIQSPSD VFGPVALLEP TPSAARDFGA VVSEAPIAVM 60 QPGSPADIAR LLGALSSSSG PRVAARGAGH SLHGQAQARG GIVVETRALP RLVEVVRRGD 120 SDGDGDGGYA DVGGGALWVE VLEACLRAGL APRSWTDYLY LTVGGTLSNG GISGQAFKHG 180 PQISNVLQLE VVTGTGEVVT CSPTQSPELF FAVLGGLGQF GVITRARIPL QLAPPKVRWV 240 RAFYDSFETF TKDQELLVSM PELVDYVEGF MVLNEQSLHS SSVAFPAPVN FTPDFGSDAG 300 SSSSNKVVYY CIEYAVHDFQ QQDSAAATAD HVVDLVSGKL SYLRPHAYSV EVAYWDFLNR 360 VRVEEESLRS RGLWDVPHPW LNLFVPSHGA ARFKDMLMDT VTQGDFEGPV LVYPLLTDRW 420 DGNMSAVVPA SPDGVVYVFS VLRSTDPARC GGACVEGILE QHRRVADEAC RRLGAKQYLA 480 RQPSRAHWRD HFGPAAWDRF VARKARFDPM HVLGPGQGIF SWADDSASSL * 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01565 | FAD_binding_4 | 1.0e-14 | 56 | 189 | 135 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
COG0277 | GlcD | 2.0e-17 | 55 | 519 | 477 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam09265 | Cytokin-bind | 1.0e-110 | 234 | 520 | 295 | + Cytokinin dehydrogenase 1, FAD and cytokinin binding. Members of this family adopt an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. They are predominantly found in plant cytokinin dehydrogenase 1, where they are capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin. | ||
PLN02441 | PLN02441 | 0 | 18 | 527 | 522 | + cytokinin dehydrogenase |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0009690 | cytokinin metabolic process |
GO:0016491 | oxidoreductase activity |
GO:0019139 | cytokinin dehydrogenase activity |
GO:0050660 | flavin adenine dinucleotide binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAE05712.2 | 0 | 1 | 528 | 1 | 531 | OSJNBb0065J09.8 [Oryza sativa (japonica cultivar-group)] |
GenBank | EAY82296.1 | 0 | 23 | 529 | 24 | 519 | hypothetical protein OsI_37507 [Oryza sativa Indica Group] |
RefSeq | NP_001064886.1 | 0 | 23 | 529 | 24 | 519 | Os10g0483500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002446804.1 | 0 | 1 | 530 | 1 | 530 | hypothetical protein SORBIDRAFT_06g022930 [Sorghum bicolor] |
RefSeq | XP_002467062.1 | 0 | 19 | 528 | 20 | 520 | hypothetical protein SORBIDRAFT_01g019000 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2q4w_A | 0 | 44 | 521 | 50 | 521 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose |
PDB | 2exr_A | 0 | 44 | 521 | 50 | 521 | A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 |
PDB | 3s1c_A | 0 | 41 | 521 | 36 | 516 | A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 |
PDB | 3dq0_A | 0 | 41 | 521 | 36 | 516 | A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 |
PDB | 3c0p_A | 0 | 41 | 521 | 36 | 516 | A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 |