y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00015211m |
Family | AA7 |
Protein Properties | Length: 537 Molecular Weight: 59151.2 Isoelectric Point: 8.4328 |
Chromosome | Chromosome/Scaffold: 041736 Start: 1819 End: 3647 |
Description | cytokinin oxidase 5 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 55 | 256 | 3.1e-29 |
STDYGQMVRAAPEAVFHPRAPADIAELIRFSAFSPAPFPVAPRGQGHSWHGQSLAPGGVVVDMRSMGRGHRAARINVSTAAGAEPYVDAGGQQLWADVLR ATLRHGLAPRVWTDYLRLTVGGTLSNAGIGGQAFRHGPQIANVHELDVITGTGEMVTCSRDKNSDLFFAALGGLGQFGVITRARIRLEQAPKRVRWVRLA YS |
Full Sequence |
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Protein Sequence Length: 537 Download |
MARTRFVALA LVTSFLSVVA GQLRPLPAAG LPGDLFNQGI ASRLRTDRDT TAKASTDYGQ 60 MVRAAPEAVF HPRAPADIAE LIRFSAFSPA PFPVAPRGQG HSWHGQSLAP GGVVVDMRSM 120 GRGHRAARIN VSTAAGAEPY VDAGGQQLWA DVLRATLRHG LAPRVWTDYL RLTVGGTLSN 180 AGIGGQAFRH GPQIANVHEL DVITGTGEMV TCSRDKNSDL FFAALGGLGQ FGVITRARIR 240 LEQAPKRVRW VRLAYSDVAM FTKDQEFLIS NQASHAGFNY VEGQVQLNRS FIEGPKSTPF 300 FSTTNLSRLA SLGSRTRVAA IYYIEGTMYY NEDTTISVDQ AVLDQLNFEP GFVFTKDVTY 360 VQFLDRVREE ERALRSASVW EVPHPWLNLF VPRSRILDFD TGVFKGLLRD ANPAGVILMY 420 PMNKDRWDDR MTAMTPTADE DVFYAVSLLW SALSADDVEQ LEKMNELVLD LCARTGMECK 480 QYLPHHTSQD GWQQHFGAKW GKIAELKAKY DPQTILSRGH KIFPSRAADV VGVATA* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 2.0e-20 | 41 | 525 | 498 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 2.0e-22 | 66 | 213 | 149 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
pfam09265 | Cytokin-bind | 2.0e-137 | 245 | 523 | 285 | + Cytokinin dehydrogenase 1, FAD and cytokinin binding. Members of this family adopt an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. They are predominantly found in plant cytokinin dehydrogenase 1, where they are capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin. | ||
PLN02441 | PLN02441 | 0 | 1 | 524 | 529 | + cytokinin dehydrogenase |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0009690 | cytokinin metabolic process |
GO:0016491 | oxidoreductase activity |
GO:0019139 | cytokinin dehydrogenase activity |
GO:0050660 | flavin adenine dinucleotide binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD17196.1 | 0 | 1 | 525 | 1 | 518 | putative cytokinin dehydrogenase 1 precursor [Oryza sativa Japonica Group] |
DDBJ | BAD17197.1 | 0 | 1 | 531 | 1 | 521 | putative cytokinin dehydrogenase 1 precursor [Oryza sativa Japonica Group] |
GenBank | EAY85042.1 | 0 | 1 | 531 | 1 | 521 | hypothetical protein OsI_06399 [Oryza sativa Indica Group] |
RefSeq | XP_002451780.1 | 0 | 1 | 536 | 1 | 534 | hypothetical protein SORBIDRAFT_04g007740 [Sorghum bicolor] |
RefSeq | XP_002453544.1 | 0 | 1 | 536 | 1 | 537 | hypothetical protein SORBIDRAFT_04g007730 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3s1c_A | 0 | 24 | 523 | 14 | 515 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3dq0_A | 0 | 24 | 523 | 14 | 515 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3c0p_A | 0 | 24 | 523 | 14 | 515 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3bw7_A | 0 | 24 | 523 | 14 | 515 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 2qkn_A | 0 | 24 | 523 | 14 | 515 | A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With Phenylurea Inhibitor Cppu |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cytokinins degradation | RXN-4621 | EC-1.5.99 | isopentenyladenine:FAD oxidoreductase |
cytokinins degradation | RXN-4641 | EC-1.5.99 | isopentenyl adenosine:FAD oxidoreductase |
cytokinins degradation | RXN-4661 | EC-1.5.99 | trans-zeatin:FAD oxidoreductase |
cytokinins degradation | RXN-4662 | EC-1.5.99 | cis-zeatin:FAD oxidoreductase |
cytokinins degradation | RXN-4681 | EC-1.5.99 | trans-zeatin riboside:FAD oxidoreductase |