y
Basic Information | |
---|---|
Species | Linum usitatissimum |
Cazyme ID | Lus10031188 |
Family | AA7 |
Protein Properties | Length: 515 Molecular Weight: 56858.8 Isoelectric Point: 6.4252 |
Chromosome | Chromosome/Scaffold: 977 Start: 483847 End: 487859 |
Description | cytokinin oxidase 3 |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA7 | 54 | 253 | 2.5e-29 |
DYGNIVQVQPSAIVYPASAADISLLITTSHSCRTPYRVAARGNGHCTRGQDMVSDGVVLDMKSLTPGPLGGVIRVSKDDPAHPFADVAGGTLWVDVLNAT LREGVAPVTWTDFLYLTVGGTLSNAGIGGQSFRFGPQISNVLEMDVVTGKGEMVTCSASNNPELYNGVLGGLGQFGVITRARLALAPAPQRVKWARLLYS |
Full Sequence |
---|
Protein Sequence Length: 515 Download |
MESKPIQIQI NLLPLTIFFI TQFATAQLLN CPLPNQLGSQ LRTDTKSLAS VSVDYGNIVQ 60 VQPSAIVYPA SAADISLLIT TSHSCRTPYR VAARGNGHCT RGQDMVSDGV VLDMKSLTPG 120 PLGGVIRVSK DDPAHPFADV AGGTLWVDVL NATLREGVAP VTWTDFLYLT VGGTLSNAGI 180 GGQSFRFGPQ ISNVLEMDVV TGKGEMVTCS ASNNPELYNG VLGGLGQFGV ITRARLALAP 240 APQRVKWARL LYSNFVHFTR DQESIISNNG RDQPNAVDYL EGQLLLDNGT PNTWETFFFP 300 SEAQSTIASL VARNGIVYVL ELAVYYDATN EQVKDQQLKQ LINWLKNDHG LAFVQDVTYQ 360 EFLTRVHLPY PNTQAHPWLN LFVPKSAISQ FNSGVLRSIV LPRNISTGPI LLYPMNRNKW 420 DVKMSATIPD EDVFYTFGLL SEANVDELQK HIELNDAVLE YCVKAGIKVD QYLPSYSTQQ 480 EWAKHFGPKW ATFQQRKAQF DPKFILSPGQ KIFN* 540 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR01679 | bact_FAD_ox | 6.0e-9 | 54 | 232 | 180 | + FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. | ||
pfam01565 | FAD_binding_4 | 7.0e-26 | 63 | 210 | 149 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
COG0277 | GlcD | 1.0e-28 | 38 | 510 | 492 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam09265 | Cytokin-bind | 1.0e-106 | 243 | 513 | 286 | + Cytokinin dehydrogenase 1, FAD and cytokinin binding. Members of this family adopt an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. They are predominantly found in plant cytokinin dehydrogenase 1, where they are capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin. | ||
PLN02441 | PLN02441 | 0 | 15 | 514 | 517 | + cytokinin dehydrogenase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0009690 | cytokinin metabolic process |
GO:0016491 | oxidoreductase activity |
GO:0019139 | cytokinin dehydrogenase activity |
GO:0050660 | flavin adenine dinucleotide binding |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACM79256.1 | 0 | 16 | 514 | 13 | 524 | cytokinin oxidase/dehydrogenase [Gossypium hirsutum] |
RefSeq | XP_002308300.1 | 0 | 10 | 514 | 7 | 527 | cytokinin oxidase [Populus trichocarpa] |
RefSeq | XP_002310104.1 | 0 | 3 | 499 | 6 | 495 | cytokinin oxidase [Populus trichocarpa] |
RefSeq | XP_002513399.1 | 0 | 26 | 514 | 24 | 509 | gulonolactone oxidase, putative [Ricinus communis] |
RefSeq | XP_002514119.1 | 0 | 37 | 514 | 43 | 529 | gulonolactone oxidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3s1c_A | 0 | 37 | 514 | 25 | 516 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3dq0_A | 0 | 37 | 514 | 25 | 516 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3c0p_A | 0 | 37 | 514 | 25 | 516 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3bw7_A | 0 | 37 | 514 | 25 | 516 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 2qkn_A | 0 | 37 | 514 | 25 | 516 | A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED With Phenylurea Inhibitor Cppu |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
HO781924 | 503 | 33 | 513 | 0 |
EB713673 | 152 | 1 | 152 | 0 |
CO121610 | 274 | 170 | 436 | 0 |
JG092923 | 197 | 317 | 513 | 0 |
CO117912 | 273 | 16 | 279 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|