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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna08644.1-v1.0-hybrid |
Family | GH13 |
Protein Properties | Length: 846 Molecular Weight: 96195.9 Isoelectric Point: 6.1636 |
Chromosome | Chromosome/Scaffold: 2 Start: 19458464 End: 19463397 |
Description | starch branching enzyme 2.2 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH13 | 281 | 606 | 9.1e-29 |
LPRIRANNYNTVQLMAVMEHSYYASFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVIHSHASNNVTDGLNGFEVGQSTQESYFHAGDRGYHK LWDSRLFNYANWEVLRFFLSNLRWWLEEYQFDGFRFDGVTSMLYHHHGINVAFTGDYNEYFSEATDVDAVVYLMLANYLIHKILPSATVIAEDVSGMPGL GRPVSEGGVGFDYRLAMAIPDKWIDYVKNKKDEEWSVTEISWSLTNRRYTEKCVSYAESHDQSIVGDKTIAFFLMDKEMYSGMSCLKEASPTVDRGIALH KMIHFITMALGGEGYLNFMGNEFGHP |
Full Sequence |
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Protein Sequence Length: 846 Download |
MLGSLGRLNL TYSSSSGSFS SSKDYPSPRL SHPKLPSFPL LRHRVLSPPT NLRCGKLERD 60 CKVRAVLTDD SSIMTVNEGE TEDIGILRTD SNLEPYKDHF KCRIKRYLEQ KSLFEKYEGG 120 LEEFARGFVK FGFNREDDGV VYREWAPAAQ EAQLVGDFNG WEGSNHKMEK GEFGVWSIKI 180 HDFDGNPAIP HNSKVKFRFK HGDGVWVDRI PAWIKYATVD PAKFAAPYDG VYWDPPPSER 240 YQFKYGRPPK PKAPRIYEAH VGMSSSEPRI SSYREFADNV LPRIRANNYN TVQLMAVMEH 300 SYYASFGYHV TNFFAVSSRS GTPEDLKYLI DKAHSLGLRV LMDVIHSHAS NNVTDGLNGF 360 EVGQSTQESY FHAGDRGYHK LWDSRLFNYA NWEVLRFFLS NLRWWLEEYQ FDGFRFDGVT 420 SMLYHHHGIN VAFTGDYNEY FSEATDVDAV VYLMLANYLI HKILPSATVI AEDVSGMPGL 480 GRPVSEGGVG FDYRLAMAIP DKWIDYVKNK KDEEWSVTEI SWSLTNRRYT EKCVSYAESH 540 DQSIVGDKTI AFFLMDKEMY SGMSCLKEAS PTVDRGIALH KMIHFITMAL GGEGYLNFMG 600 NEFGHPEWID FPRDGNGWSY EKCRRQWNLV DTDHLRYKFM NAFDRAMHLL DEKFSFLSST 660 KQIVSSTDEE DKVIVFERGD LVFVFNFHPV NTYDGYKVGC DLPGKYRVAL DSDAFEFGGH 720 GRVRKPFAFP VGHDVDHFTF PEGIPGVPET NFNGRPNSFK VLSPPRTSVV YYRVDESKEE 780 NSTAEVVVGQ ENKEVGYMKH ENVGPGVNLL SENSTAEVVV GQENKEVGSM KHENVGPGVN 840 LSSDN* 900 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02960 | PLN02960 | 2.0e-7 | 103 | 182 | 86 | + alpha-amylase | ||
PLN03244 | PLN03244 | 1.0e-142 | 187 | 771 | 590 | + alpha-amylase; Provisional | ||
PLN02447 | PLN02447 | 0 | 26 | 792 | 767 | + 1,4-alpha-glucan-branching enzyme | ||
cd11321 | AmyAc_bac_euk_BE | 0 | 237 | 645 | 409 | + Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes. Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. | ||
PLN02960 | PLN02960 | 0 | 187 | 772 | 596 | + alpha-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0043169 | cation binding |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3aml_A | 0 | 73 | 780 | 1 | 699 | A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L |
PDB | 3amk_A | 0 | 73 | 780 | 1 | 699 | A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L |
PDB | 3vu2_B | 0 | 73 | 780 | 1 | 699 | A Chain A, Structure Of The Starch Branching Enzyme I (bei) Complexed With Maltopentaose From Oryza Sativa L |
PDB | 3vu2_A | 0 | 73 | 780 | 1 | 699 | A Chain A, Structure Of The Starch Branching Enzyme I (bei) Complexed With Maltopentaose From Oryza Sativa L |
PDB | 3k1d_A | 1.96182e-44 | 139 | 769 | 137 | 717 | A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From Mycob Tuberculosis H3 |
Sequence Alignments (This image is cropped. Click for full image.) |
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