y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.A01533.1 |
Family | GH13 |
Protein Properties | Length: 845 Molecular Weight: 96082.8 Isoelectric Point: 4.9385 |
Chromosome | Chromosome/Scaffold: 1 Start: 23914728 End: 23937426 |
Description | starch branching enzyme 2.1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH13 | 358 | 679 | 1.9e-30 |
LPRIKRLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDSHYFHSGSRGYHWMWD SRLFNYGSWEVLRYLLSNARWWLEEYRFDGFRFDGVTSMMYTHHGLQVAFTGNYNEYFGFATDVDAVIYLMLVNDLIHGLFPEAVTIGEDVSGMPTFCIP VQDGGVGFDYRLHMAIADKWIEMLKKRDEDWRMGDITHTLTNRRWLEKCVSYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPVIDRGIALHKMIR LITMGLGGEGYLNFMGNEFGHP |
Full Sequence |
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Protein Sequence Length: 845 Download |
MVYTLSGIRF PSAPSVCVSP SPSGFNGDRR SSGGVSLLLN NKAPLSRKIF AGKSSYDSDT 60 SSLSLAASER VLVPGGYSDV PASSTDQVET SEAVADSQVI HDSNDLTMEA EEEIEVKEEQ 120 DSVSSSVIGD GDASEKSAPL QDAAVIEKEE VRKRTIPPPG SGQRIYEIDS LLLGYREHLD 180 YRFGQYRKMR EAIDKYEGGL EAFSRGYEKF GFTRSADGIT YREWAPGAKW AALIGDFNNW 240 NPNADVMTRN EFGIWEIFLP NNADGSPAIP HGSRVKIRMD TPSGLKDSIP AWIKFSIQAP 300 GEIPYNGIYY DPPDEMKYVF KHSRPKRPNS LRIYETHVGM SSTEPVINTY ANFRDEVLPR 360 IKRLGYNAVQ IMAIQEHSYY ASFGYHVTNF FAPSSRFGTP DDLKSLIDKA HELGLLVLMD 420 IVHSHASNNV LDGLNMFDGT DSHYFHSGSR GYHWMWDSRL FNYGSWEVLR YLLSNARWWL 480 EEYRFDGFRF DGVTSMMYTH HGLQVAFTGN YNEYFGFATD VDAVIYLMLV NDLIHGLFPE 540 AVTIGEDVSG MPTFCIPVQD GGVGFDYRLH MAIADKWIEM LKKRDEDWRM GDITHTLTNR 600 RWLEKCVSYA ESHDQALVGD KTIAFWLMDK DMYDFMALDR PSTPVIDRGI ALHKMIRLIT 660 MGLGGEGYLN FMGNEFGHPE WMDFPREGNG FSYDKCRRRF DLGDAEYLRY RGMQEFDQAM 720 QHVEEAYGFM TSEHQYISRK DEGDRVIVFE RGNLVFVFNF HWNNSYTDYH VGCLKPGKYK 780 IVLNSDDALF GGYSRIDPLA EFFTFEEWYD DRPSSFLVYA PSRTAIVYAL VEDEQLPVKA 840 LDKS* 900 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02960 | PLN02960 | 3.0e-7 | 182 | 259 | 84 | + alpha-amylase | ||
PLN03244 | PLN03244 | 4.0e-140 | 267 | 830 | 572 | + alpha-amylase; Provisional | ||
PLN02447 | PLN02447 | 0 | 128 | 838 | 717 | + 1,4-alpha-glucan-branching enzyme | ||
cd11321 | AmyAc_bac_euk_BE | 0 | 315 | 718 | 405 | + Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes. Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. | ||
PLN02960 | PLN02960 | 0 | 267 | 831 | 569 | + alpha-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0043169 | cation binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN05322.1 | 0 | 1 | 840 | 1 | 833 | starch branching enzyme II [Populus trichocarpa] |
GenBank | ABO31358.1 | 0 | 1 | 832 | 1 | 840 | starch branching enzyme II-1 [Malus x domestica] |
GenBank | ABO31359.1 | 0 | 1 | 832 | 1 | 840 | starch branching enzyme II-2 [Malus x domestica] |
EMBL | CBI30261.1 | 0 | 1 | 840 | 1 | 859 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002534111.1 | 0 | 1 | 842 | 2 | 848 | starch branching enzyme II, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3amk_A | 0 | 165 | 835 | 13 | 697 | A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L |
PDB | 3aml_A | 0 | 165 | 835 | 13 | 697 | A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L |
PDB | 3vu2_B | 0 | 165 | 835 | 13 | 697 | A Chain A, Structure Of The Starch Branching Enzyme I (bei) Complexed With Maltopentaose From Oryza Sativa L |
PDB | 3vu2_A | 0 | 165 | 835 | 13 | 697 | A Chain A, Structure Of The Starch Branching Enzyme I (bei) Complexed With Maltopentaose From Oryza Sativa L |
PDB | 3k1d_A | 0 | 218 | 826 | 137 | 717 | A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From Mycob Tuberculosis H3 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO794536 | 686 | 159 | 833 | 0 |
HO777638 | 630 | 215 | 833 | 0 |
HO458123 | 395 | 448 | 831 | 0 |
HO458123 | 318 | 137 | 447 | 0 |
HO777638 | 47 | 168 | 214 | 0.0000000009 |
Sequence Alignments (This image is cropped. Click for full image.) |
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