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Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10000235m |
Family | GH13 |
Protein Properties | Length: 823 Molecular Weight: 94058.7 Isoelectric Point: 5.7433 |
Chromosome | Chromosome/Scaffold: 6 Start: 895416 End: 901960 |
Description | starch branching enzyme 2.2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH13 | 335 | 656 | 5.4e-29 |
LPRIKRLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRCGTPEELKSLIDRAHELGLVVLMDIVHSHASKNTLDGLNMFDGTDAHYFHSGPRGYHWMWD SRLFNYGSWEVLRYLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLSVGFTGNYTEYFGLETDVDAVTYLMLVNDLIHGLYPEAITVGEDVSGMPTFCIP VQDGGVGFDYRLHMAIADKWIEILKKRDEDWQMGDIVYTLTNRRWSEKCISYAESHDQALVGDKTIAFWLMDKDMYDFMAVDRPSTPLIDRGIALHKMIR LITMGLGGEGYLNFMGNEFGHP |
Full Sequence |
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Protein Sequence Length: 823 Download |
MVVIHGVSVT PRFPLPSSSP RPLNNTGFNG NSSLSFFLKK HHLSRKIFAG KQSAEFDSSS 60 QAIAASDKVL VPDNLDDDPS SFSEEPQRFD LEVQTMEKNE AVTTEEQGSV FDPRKVYNDA 120 KVVKERAAKP RTVPPPGDGK KIYEIDPMLR SYSSHLDYRY GQYRRLREEI DKYEGGLEAF 180 SRGYEKLGFS RSDAGITYRE WAPGAKAASL IGDFNNWNSN ADIMTRNEFG VWEIFLPNNS 240 DGSPAIPHGS RVKIRMDTPS GIKDSIPAWI KFSVQAPGEI PFNGIYYDPP EEEKYVFKHP 300 QPKRPKSLRI YEAHVGMSST EPMVNTYANF RDDVLPRIKR LGYNAVQIMA IQEHSYYASF 360 GYHVTNFFAP SSRCGTPEEL KSLIDRAHEL GLVVLMDIVH SHASKNTLDG LNMFDGTDAH 420 YFHSGPRGYH WMWDSRLFNY GSWEVLRYLL SNARWWLEEY KFDGFRFDGV TSMMYTHHGL 480 SVGFTGNYTE YFGLETDVDA VTYLMLVNDL IHGLYPEAIT VGEDVSGMPT FCIPVQDGGV 540 GFDYRLHMAI ADKWIEILKK RDEDWQMGDI VYTLTNRRWS EKCISYAESH DQALVGDKTI 600 AFWLMDKDMY DFMAVDRPST PLIDRGIALH KMIRLITMGL GGEGYLNFMG NEFGHPEWID 660 FPRGEQRLSD GSVIPGNNFS YDKCRRRFDL GDADYLRYHG LQEFDQAMQH IEEKYGFMTS 720 EHQFISRKDE GDRVIIFERG DLVFVFNFHW TSSYFDYRIG CSKPGKYKIV LDSDDPLFGG 780 FGRLDSKAEY FTYDGSYDGR PCSFMVYTPS RTAVVYALAN HD* 840 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02960 | PLN02960 | 3.0e-9 | 124 | 236 | 128 | + alpha-amylase | ||
PLN03244 | PLN03244 | 7.0e-139 | 244 | 819 | 584 | + alpha-amylase; Provisional | ||
PLN02447 | PLN02447 | 0 | 64 | 822 | 766 | + 1,4-alpha-glucan-branching enzyme | ||
cd11321 | AmyAc_bac_euk_BE | 0 | 291 | 706 | 417 | + Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes. Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. | ||
PLN02960 | PLN02960 | 0 | 244 | 819 | 580 | + alpha-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0043169 | cation binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB03100.1 | 0 | 8 | 822 | 3 | 800 | starch branching enzyme class II [Arabidopsis thaliana] |
GenBank | ABN05322.1 | 0 | 12 | 819 | 10 | 824 | starch branching enzyme II [Populus trichocarpa] |
GenBank | ABO31358.1 | 0 | 12 | 819 | 9 | 839 | starch branching enzyme II-1 [Malus x domestica] |
GenBank | ABO31359.1 | 0 | 12 | 818 | 9 | 838 | starch branching enzyme II-2 [Malus x domestica] |
RefSeq | NP_195985.3 | 0 | 1 | 822 | 1 | 805 | SBE2.2 (starch branching enzyme 2.2); 1,4-alpha-glucan branching enzyme [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3amk_A | 0 | 132 | 822 | 3 | 696 | A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L |
PDB | 3vu2_B | 0 | 132 | 822 | 3 | 696 | A Chain A, Structure Of The Starch Branching Enzyme I (bei) Complexed With Maltopentaose From Oryza Sativa L |
PDB | 3vu2_A | 0 | 132 | 822 | 3 | 696 | A Chain A, Structure Of The Starch Branching Enzyme I (bei) Complexed With Maltopentaose From Oryza Sativa L |
PDB | 3aml_A | 0 | 132 | 822 | 3 | 696 | A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L |
PDB | 3k1d_A | 0 | 123 | 814 | 81 | 717 | A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From Mycob Tuberculosis H3 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO794536 | 685 | 136 | 820 | 0 |
HO777638 | 629 | 192 | 820 | 0 |
HO458123 | 393 | 425 | 817 | 0 |
HO458123 | 302 | 128 | 424 | 0 |
HO777638 | 47 | 145 | 191 | 0.000000003 |
Sequence Alignments (This image is cropped. Click for full image.) |
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