y
Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10000256m |
Family | GH13 |
Protein Properties | Length: 857 Molecular Weight: 97329.2 Isoelectric Point: 5.664 |
Chromosome | Chromosome/Scaffold: 5 Start: 42653994 End: 42661287 |
Description | starch branching enzyme 2.2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH13 | 295 | 631 | 2.1e-26 |
YNTVQLMAVMEHSYYASFGYHVTNFFAASSRSGTPEDLKYLIDKAHSLGLRVLVDIVHSHASNNVTDGLNGFDVGQSSQESYFHTGDQGYHKLWDSRLFN YANWEVLRFLLSNLRWWIEEFKFDGFRFDGVTSMLYHHHGINMSFTGNYNEYFSEATDVDAVVYLMLANCLVHNIFPDATVIAEDVSGMPGLGSPVSMGG IGFDYRLAMAIPDRWIDYLKNKKDEEWSMKEISQSLTNRRYTEKCISYAESHDQLLLARMLKEMTLKTFTGFFTAIVGDKTIAFLLMDQEMYTGMSSLTD ASPTIERGITLHKMIHFITMALGGEGYLNFMGNEFGH |
Full Sequence |
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Protein Sequence Length: 857 Download |
MLGSLSLVSQ LTAGCSSLPS SKTYTRVAEN NELAKQLPIK RTCGFQKLLR HHISTSRFLV 60 PQRVKQNFPI SSVLTDDSSS MTRMEDETEN IGILSTDQGL EPFKDHFKYR MKRYVDQKLL 120 LEKHEGGLEE FAKGYLEFGF NREDGGIVYR EWAPAAKEAQ LIGDFNGWDG SNHKMERNEF 180 GVWSISIPDS GGKPAIPHGS RVKFRFKHDG VFIDRIPAWI KYATVDSSRF GAPYDGVYWD 240 PPPSERYEFK YPRPPKPKAP RIYEAHVGMS SSEPRVNSYR EFADDVLPRI WANNYNTVQL 300 MAVMEHSYYA SFGYHVTNFF AASSRSGTPE DLKYLIDKAH SLGLRVLVDI VHSHASNNVT 360 DGLNGFDVGQ SSQESYFHTG DQGYHKLWDS RLFNYANWEV LRFLLSNLRW WIEEFKFDGF 420 RFDGVTSMLY HHHGINMSFT GNYNEYFSEA TDVDAVVYLM LANCLVHNIF PDATVIAEDV 480 SGMPGLGSPV SMGGIGFDYR LAMAIPDRWI DYLKNKKDEE WSMKEISQSL TNRRYTEKCI 540 SYAESHDQLL LARMLKEMTL KTFTGFFTAI VGDKTIAFLL MDQEMYTGMS SLTDASPTIE 600 RGITLHKMIH FITMALGGEG YLNFMGNEFG HPEWIDFPRE GNEWSYEKCR RQWNLVDADH 660 LRYKFMNAFG RAMNELDDKF PFLASTKQIV SSTNEEDKVI VFERGDLVFV FNFHPENTYE 720 GYKVGCDLPG KYRVALDSDA WGFGGDGRVG HNIDHFTSPE GIPGVAETNF NNRPNSFRVL 780 SPPRTSVVYY RVEESQEGHN NSEPVNVQGK LAADVPAELE SPESSATLAA DDVDDVTARK 840 IEDQKQNRIV GGESNV* 900 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02960 | PLN02960 | 8.0e-6 | 131 | 189 | 65 | + alpha-amylase | ||
PLN03244 | PLN03244 | 1.0e-133 | 194 | 789 | 597 | + alpha-amylase; Provisional | ||
PLN02447 | PLN02447 | 0 | 54 | 797 | 749 | + 1,4-alpha-glucan-branching enzyme | ||
cd11321 | AmyAc_bac_euk_BE | 0 | 243 | 671 | 429 | + Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes. Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. | ||
PLN02960 | PLN02960 | 0 | 194 | 790 | 598 | + alpha-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0043169 | cation binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN05321.1 | 0 | 27 | 829 | 18 | 811 | starch branching enzyme I [Populus trichocarpa] |
EMBL | CAA54308.1 | 0 | 1 | 815 | 1 | 797 | 1,4-alpha-glucan branching enzyme [Manihot esculenta] |
EMBL | CBI18866.1 | 0 | 1 | 843 | 1 | 840 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002284841.1 | 0 | 33 | 828 | 12 | 792 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002510672.1 | 0 | 1 | 831 | 49 | 861 | starch branching enzyme II, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3aml_A | 0 | 81 | 797 | 1 | 698 | A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L |
PDB | 3vu2_B | 0 | 81 | 797 | 1 | 698 | A Chain A, Structure Of The Starch Branching Enzyme I (bei) Complexed With Maltopentaose From Oryza Sativa L |
PDB | 3vu2_A | 0 | 81 | 797 | 1 | 698 | A Chain A, Structure Of The Starch Branching Enzyme I (bei) Complexed With Maltopentaose From Oryza Sativa L |
PDB | 3amk_A | 0 | 81 | 797 | 1 | 698 | A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L |
PDB | 3k1d_A | 6.99949e-42 | 96 | 787 | 82 | 717 | A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym: 1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase From Mycob Tuberculosis H3 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO619167 | 650 | 177 | 824 | 0 |
HO794536 | 709 | 93 | 789 | 0 |
HO777638 | 657 | 145 | 789 | 0 |
CX109187 | 409 | 389 | 797 | 0 |
HO458123 | 424 | 380 | 792 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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