y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29762.m000486 |
Family | GH13 |
Protein Properties | Length: 894 Molecular Weight: 103376 Isoelectric Point: 6.3479 |
Chromosome | Chromosome/Scaffold: 29762 Start: 101244 End: 111942 |
Description | Alpha amylase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH13 | 422 | 742 | 3.6e-25 |
VEKVLPHVKEAGYNAIQLIGVVEHKDYFTIGYRVTNLYAVSSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYSAADEMVGLSLFDGSNDCYFHTGKRGHH KFWGTRMFKYGNHEVMHYLLSNLNWWVVEYQIDGFQFHSLSSMMYTHNGFASFTGDLEEYCNQYVDRDALLYLILANELLHTIHPNIITIAEDATYYPGL CDPTSQGGLGFDYYVNVSASEMWSSFLKNIPDSEWSMSKIVSTLMGNKQNADKMLLYAENHNQSISGGQSFAEVMFGEFKDHTPASKEPLLRGCGLHKMI RMITFTIGGFAYLNFMGNEFG |
Full Sequence |
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Protein Sequence Length: 894 Download |
MTSLLSTKSF FALYPNSNAH NLPFQFKSQS INLSNKIKFK IDCTAANQPP KQQKHSKKTR 60 ETETEDEKGI NPVGFLTRLC ISHKQFAQFL RERHKSLKDL KEELFKRNLM IKDIAYGFEL 120 MGLHRHPEHR ADYMEWAPGA RYCALVGDFN GWSPTENYAR EGHLGHDDYG YWFIILEDKL 180 REGEKPDELY FQQYNYMDDY DKGDSGINID EIFKKANDDY WEPGEDEYIK NRLKVPAKLY 240 EQWFGPNGPE TMEELDAIPL PDAETRYKEW KKEHADDPPS NLPPFDVIDQ GNEFDIFNVA 300 SDPMWLEKIR TKEPPLPYWF ETRKGRQAWL KKYAPTIPHG SKYRVYFNTP NGPLERVPAW 360 ATYVEPGTDG KQPFAIHWEP PPEFAYKWKN TRPKVPKSLR IYECHVGISG SEPKISSFGD 420 FVEKVLPHVK EAGYNAIQLI GVVEHKDYFT IGYRVTNLYA VSSRYGTPDD FKRLVDEAHG 480 LGLLVFLDIV HSYSAADEMV GLSLFDGSND CYFHTGKRGH HKFWGTRMFK YGNHEVMHYL 540 LSNLNWWVVE YQIDGFQFHS LSSMMYTHNG FASFTGDLEE YCNQYVDRDA LLYLILANEL 600 LHTIHPNIIT IAEDATYYPG LCDPTSQGGL GFDYYVNVSA SEMWSSFLKN IPDSEWSMSK 660 IVSTLMGNKQ NADKMLLYAE NHNQSISGGQ SFAEVMFGEF KDHTPASKEP LLRGCGLHKM 720 IRMITFTIGG FAYLNFMGNE FGHPKRVEFP MASNNFSYSL ANRCWDLLEN EDVHRHLFSF 780 DKDLMNLDEN QKLLSRSLPN IHHVNDANMV ISYMRGPLLF IFNFHPTNAY KRYSVGVEDA 840 GEYQIILNTD EKKYGGQGLI KVDQYLQRTM SKRVDGLRNC LEVPLPSRTA QVGY 900 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02447 | PLN02447 | 4.0e-12 | 84 | 178 | 95 | + 1,4-alpha-glucan-branching enzyme | ||
cd11321 | AmyAc_bac_euk_BE | 3.0e-161 | 382 | 782 | 407 | + Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes. Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. | ||
PLN02960 | PLN02960 | 0 | 2 | 894 | 893 | + alpha-amylase | ||
PLN03244 | PLN03244 | 0 | 1 | 892 | 899 | + alpha-amylase; Provisional | ||
PLN02447 | PLN02447 | 0 | 334 | 894 | 574 | + 1,4-alpha-glucan-branching enzyme |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0043169 | cation binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN05323.1 | 0 | 12 | 892 | 27 | 887 | putative starch branching enzyme [Populus trichocarpa] |
DDBJ | BAB02827.1 | 0 | 5 | 892 | 4 | 894 | starch-branching enzyme-like protein [Arabidopsis thaliana] |
EMBL | CBI26672.1 | 0 | 1 | 892 | 1 | 887 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_001154629.1 | 0 | 5 | 892 | 4 | 890 | alpha-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
RefSeq | XP_002529457.1 | 0 | 1 | 894 | 1 | 894 | 1,4-alpha-glucan branching enzyme, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3amk_A | 0 | 335 | 863 | 114 | 653 | A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L |
PDB | 3aml_A | 0 | 335 | 863 | 114 | 653 | A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L |
PDB | 3vu2_B | 0 | 335 | 863 | 114 | 653 | A Chain A, Structure Of The Starch Branching Enzyme I (bei) Complexed With Maltopentaose From Oryza Sativa L |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY965821 | 292 | 265 | 556 | 0 |
JG636329 | 270 | 343 | 612 | 0 |
BF272517 | 278 | 356 | 633 | 0 |
CO104525 | 273 | 383 | 655 | 0 |
ES814188 | 281 | 603 | 883 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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