y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb06g021250.1 |
Family | GH19 |
Protein Properties | Length: 280 Molecular Weight: 28980 Isoelectric Point: 4.8779 |
Chromosome | Chromosome/Scaffold: 6 Start: 50566639 End: 50567872 |
Description | homolog of carrot EP3-3 chitinase |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH19 | 77 | 279 | 0 |
VGNVVTDAFFNGIKNQAGSGCEGSNFYSRDAFLSAASASAYSGFAQGGSEDDGKREIAAFFAHATHETGHFCYISEINKDNAYCDSSYTQWPCAAGQKYY GRGPLQISWNYNYGPAGQSIGFDGLGNPDAVAQDAVIAFKAALWFWMNNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQFGVDPGSN LTC |
Full Sequence |
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Protein Sequence Length: 280 Download |
MASSPTILTV LALGLLALLC AVGPAAAQNC GCQPDFCCSQ YGYCGQTSEY CGTGCRSGPC 60 TGTGSGGSSG SGSGANVGNV VTDAFFNGIK NQAGSGCEGS NFYSRDAFLS AASASAYSGF 120 AQGGSEDDGK REIAAFFAHA THETGHFCYI SEINKDNAYC DSSYTQWPCA AGQKYYGRGP 180 LQISWNYNYG PAGQSIGFDG LGNPDAVAQD AVIAFKAALW FWMNNVHGVM PQGFGATIRA 240 INGALECNGN NPAQMNARVG YYKQYCQQFG VDPGSNLTC* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3179 | COG3179 | 0.0001 | 128 | 249 | 156 | + Predicted chitinase [General function prediction only] | ||
cd00442 | lysozyme_like | 1.0e-9 | 162 | 230 | 69 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
pfam00182 | Glyco_hydro_19 | 3.0e-86 | 80 | 279 | 234 | + Chitinase class I. | ||
cd00325 | chitinase_glyco_hydro_19 | 2.0e-91 | 81 | 279 | 232 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. |
Gene Ontology | |
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GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0008061 | chitin binding |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAT39991.1 | 0 | 10 | 279 | 14 | 281 | chitinase [Zea mays subsp. parviglumis] |
GenBank | AAT40006.1 | 0 | 2 | 279 | 4 | 278 | chitinase [Zea diploperennis] |
GenBank | ACJ61960.1 | 0 | 10 | 279 | 14 | 275 | chitinase [Zea mays subsp. parviglumis] |
GenBank | ACJ62000.1 | 0 | 10 | 279 | 14 | 275 | chitinase [Zea mays subsp. parviglumis] |
RefSeq | XP_002448108.1 | 0 | 1 | 279 | 1 | 279 | hypothetical protein SORBIDRAFT_06g021250 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3hbh_A | 0 | 77 | 279 | 2 | 204 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
PDB | 3hbe_X | 0 | 77 | 279 | 2 | 204 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
PDB | 3hbd_A | 0 | 77 | 279 | 2 | 204 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 2z38_A | 0 | 78 | 279 | 7 | 240 | A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
PDB | 2z37_D | 0 | 78 | 279 | 4 | 237 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
chitin degradation II | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |
chitin degradation II | RXN-12623 | EC-3.2.1.14 | chitinase |
chitin degradation II | RXN-12624 | EC-3.2.1.14 | chitinase |
chitin degradation III (carnivorous plants) | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |