y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H00328.1 |
Family | GH19 |
Protein Properties | Length: 282 Molecular Weight: 29547.6 Isoelectric Point: 4.361 |
Chromosome | Chromosome/Scaffold: 8 Start: 4553763 End: 4554763 |
Description | homolog of carrot EP3-3 chitinase |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH19 | 79 | 281 | 0 |
VAAVVTDSFFNSIIGQADAGCAGKSFYTRQAFLDAAGGYPEFGTVGSADDSKREIAAFFAHVTHETGHFCYIEEIDGPSKDYCDESNTQYPCNPNKGYYG RGPLQISWNYNYGPAGESIGFDGLNSPETVANDVAVSFKTAFWFWMNNVHSVITSGQGFGATIKAINGGECGGGNSGAVQARVQYYTDYCNQFGVSPGDN LTC |
Full Sequence |
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Protein Sequence Length: 282 Download |
MAKSNSIARA LLNILVVSGL IVGFSPAYVF GQNCGCAADL CCSQYGYCGT GEQYCGTGCQ 60 SGLCYSSSTP TTPSSGVSVA AVVTDSFFNS IIGQADAGCA GKSFYTRQAF LDAAGGYPEF 120 GTVGSADDSK REIAAFFAHV THETGHFCYI EEIDGPSKDY CDESNTQYPC NPNKGYYGRG 180 PLQISWNYNY GPAGESIGFD GLNSPETVAN DVAVSFKTAF WFWMNNVHSV ITSGQGFGAT 240 IKAINGGECG GGNSGAVQAR VQYYTDYCNQ FGVSPGDNLT C* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
smart00270 | ChtBD1 | 6.0e-8 | 36 | 62 | 27 | + Chitin binding domain. | ||
cd00035 | ChtBD1 | 3.0e-8 | 36 | 62 | 27 | + Hevein or type 1 chitin binding domain. Hevein or type 1 chitin binding domain (ChtBD1), a lectin domain found in proteins from plants and fungi that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins such as hevein, a major IgE-binding allergen in natural rubber latex, and the alpha subunit of Kluyveromyces lactis killer toxin. This domain is involved in the recognition and/or binding of chitin subunits; it typically occurs N-terminal to glycosyl hydrolase domains in chitinases, together with other carbohydrate-binding domains, or by itself in tandem-repeat arrangements. | ||
cd00442 | lysozyme_like | 1.0e-8 | 169 | 225 | 57 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
pfam00182 | Glyco_hydro_19 | 2.0e-87 | 82 | 281 | 232 | + Chitinase class I. | ||
cd00325 | chitinase_glyco_hydro_19 | 3.0e-96 | 83 | 281 | 230 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. |
Gene Ontology | |
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GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0008061 | chitin binding |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACM45716.1 | 0 | 8 | 281 | 3 | 272 | class IV chitinase [Pyrus pyrifolia] |
RefSeq | XP_002274620.1 | 0 | 33 | 281 | 26 | 273 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002274819.1 | 0 | 33 | 281 | 26 | 273 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002274905.1 | 0 | 7 | 281 | 1 | 267 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002326040.1 | 0 | 11 | 281 | 5 | 270 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3hbh_A | 0 | 78 | 281 | 1 | 204 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 3hbe_X | 0 | 78 | 281 | 1 | 204 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 3hbd_A | 0 | 78 | 281 | 1 | 204 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 4dyg_B | 0 | 77 | 281 | 1 | 237 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 4dyg_A | 0 | 77 | 281 | 1 | 237 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |