y
Basic Information | |
---|---|
Species | Panicum virgatum |
Cazyme ID | Pavirv00001806m |
Family | GH19 |
Protein Properties | Length: 247 Molecular Weight: 26314.1 Isoelectric Point: 4.3952 |
Chromosome | Chromosome/Scaffold: 010333 Start: 9093 End: 10966 |
Description | basic chitinase |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH19 | 22 | 240 | 0 |
VGSIITQDVYNSMLPNRDNSICPANGFYTYDAFIQAAGAFSGFGTSGNSDEDNRRELAAFFGQTSHETNGGAAGQYTWGYCFKEEINKATSPPYYGRGPI QLTGQTNYQQAGDAIGADLVGNPDLVSTDPVISFKTAIWFWMTAQSPKPSCHDVILGNWTPSSTDAAAGRVPGYGVITNIINGRFECGVGTNDANVNRIG YYQHYCDMLGVGYGDNLDC |
Full Sequence |
---|
Protein Sequence Length: 247 Download |
MATRLALAAM AALLVGVAAA DVGSIITQDV YNSMLPNRDN SICPANGFYT YDAFIQAAGA 60 FSGFGTSGNS DEDNRRELAA FFGQTSHETN GGAAGQYTWG YCFKEEINKA TSPPYYGRGP 120 IQLTGQTNYQ QAGDAIGADL VGNPDLVSTD PVISFKTAIW FWMTAQSPKP SCHDVILGNW 180 TPSSTDAAAG RVPGYGVITN IINGRFECGV GTNDANVNRI GYYQHYCDML GVGYGDNLDC 240 YSQQHF* 300 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3179 | COG3179 | 6.0e-12 | 73 | 165 | 130 | + Predicted chitinase [General function prediction only] | ||
cd00442 | lysozyme_like | 6.0e-14 | 79 | 202 | 124 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
cd00325 | chitinase_glyco_hydro_19 | 1.0e-105 | 26 | 240 | 231 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. | ||
pfam00182 | Glyco_hydro_19 | 2.0e-106 | 25 | 240 | 233 | + Chitinase class I. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG53610.1 | 0 | 16 | 246 | 18 | 250 | 24.8 kDa class II endochitinase-antifreeze protein precursor [Secale cereale] |
GenBank | AAL34317.1 | 0 | 24 | 246 | 34 | 259 | L40336_1 chitinase [Oryza sativa Indica Group] |
DDBJ | BAA31997.1 | 0 | 24 | 246 | 34 | 259 | chitinase [Oryza sativa] |
GenBank | EAY79390.1 | 0 | 24 | 246 | 34 | 259 | hypothetical protein OsI_34517 [Oryza sativa Indica Group] |
RefSeq | NP_001065196.1 | 0 | 24 | 246 | 34 | 259 | Os10g0542900 [Oryza sativa (japonica cultivar-group)] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3cql_B | 0 | 22 | 246 | 2 | 242 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 3cql_A | 0 | 22 | 246 | 2 | 242 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 4dyg_B | 0 | 22 | 246 | 3 | 243 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 4dyg_A | 0 | 22 | 246 | 3 | 243 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 4dwx_B | 0 | 22 | 246 | 3 | 243 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
chitin degradation II | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |
chitin degradation II | RXN-12623 | EC-3.2.1.14 | chitinase |
chitin degradation II | RXN-12624 | EC-3.2.1.14 | chitinase |
chitin degradation III (carnivorous plants) | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |