y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s231_59V6.1 |
Family | GT4 |
Protein Properties | Length: 535 Molecular Weight: 59403.8 Isoelectric Point: 8.073 |
Chromosome | Chromosome/Scaffold: 231 Start: 534222 End: 536836 |
Description | UDP-Glycosyltransferase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT4 | 335 | 473 | 8.6e-24 |
VLGAAGRLVRDKGHPLLFEAFSEIRKKHKDVYLLVAGSGPWGDRYEELAPNAKTLGPLTPLQLADFYNAVDIFVNPTLRSQGLDHTLLEAMQCGKPLLAT HFSSIVWSVITDPTFGYTFSPNVESLVAALEQVVTDGKE |
Full Sequence |
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Protein Sequence Length: 535 Download |
MMGEKPRWRS GAAKGNLGAM AVSWRLVWAV MLSGSLLCYV MVLMGSASCR SNVGFEGSDA 60 RNFANSGKLS TNGADGVDLA LWSGDVRDLS TAWNRLCYGS KPPQRINIAL FVKKWPTGGT 120 PGGLERHAMT LHRVLADRGH VVHVFTMRQP GATTSDEDEE AQEEQRHPNM HLHFVKPNAG 180 GGFDHSRAWE KFSEINATHP FDIVHSESVA LPHWRAREIE KLAASWHGIA FEVIHSDIVQ 240 DLIRKPGEPR SQELSQSMGG RLARVADEVR FFPSYKHHVA TSDYVGDVLR TIYELPLQKV 300 HIILNGVNEQ EFRPNPFAGA AFRAKYGVPE NASLVLGAAG RLVRDKGHPL LFEAFSEIRK 360 KHKDVYLLVA GSGPWGDRYE ELAPNAKTLG PLTPLQLADF YNAVDIFVNP TLRSQGLDHT 420 LLEAMQCGKP LLATHFSSIV WSVITDPTFG YTFSPNVESL VAALEQVVTD GKEKLWEKGQ 480 TCLAYASKMF TAKKMASAYE RLFLCMTNET HCMYPLPIDE QECRSRKHGR RALL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR00032 | argG | 4.0e-33 | 107 | 502 | 410 | + argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria [Amino acid biosynthesis, Glutamate family]. | ||
COG0438 | RfaG | 2.0e-33 | 106 | 509 | 412 | + Glycosyltransferase [Cell envelope biogenesis, outer membrane] | ||
cd03811 | GT1_WabH_like | 2.0e-34 | 107 | 436 | 343 | + This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. | ||
cd03798 | GT1_wlbH_like | 5.0e-44 | 122 | 502 | 392 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
cd03801 | GT1_YqgM_like | 1.0e-58 | 107 | 503 | 410 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001769489.1 | 0 | 77 | 523 | 2 | 448 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778030.1 | 0.000001 | 1 | 26 | 1 | 26 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001778030.1 | 0 | 84 | 534 | 15 | 459 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002303479.1 | 0 | 82 | 514 | 59 | 488 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519899.1 | 0 | 82 | 515 | 56 | 486 | glycosyltransferase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3okp_A | 0.0000001 | 305 | 433 | 170 | 308 | A Chain A, Crystal Structure Of Human Glcat-S Apo Form |
PDB | 3okc_A | 0.0000001 | 305 | 433 | 170 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' Bound To Gdp (Orthorhombic Crystal Form) |
PDB | 3oka_B | 0.0000001 | 305 | 433 | 170 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
PDB | 3oka_A | 0.0000001 | 305 | 433 | 170 | 308 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
PDB | 3mbo_H | 0.0003 | 115 | 503 | 43 | 402 | A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound With Udp And L-Malate |