y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10034760 |
Family | GT4 |
Protein Properties | Length: 522 Molecular Weight: 58203.6 Isoelectric Point: 9.4602 |
Chromosome | Chromosome/Scaffold: 66 Start: 203053 End: 205003 |
Description | UDP-Glycosyltransferase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT4 | 341 | 477 | 5e-24 |
VLGVAGRLVKDKGHPILYEAISKFITNHPNVYLVVAGSGPWERRYRELGPQVLVVGSMAPSELKAFYNSIDVFVNPTLRPQGLDLTLMEAMMSGTPVMAS RFASIKGTIIVDDEFGFMFSPNVESLVEALEIAAEEG |
Full Sequence |
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Protein Sequence Length: 522 Download |
MNSKQRCIFF NQLASNSSRN RPFMAFNTHL TTNNNKPKKP QLLLLPNSSS SSHSNLCALF 60 FFIALFTIPS LFVLRRTPAP SSSSSPSSAI QPWSGDLRAA DFAWNRLAFS SDENSVKLKI 120 AVFSRKWPIG TVPGGMERHA FTLHSALARR GHKVHVFTSP IHDQAFPSST TSSYGVVIHS 180 HEGESAGKFK YRKAWELFEK ENNRSSFDVI HSESVALPYW KARNVPNLVV TWHGIAYEAL 240 QSTIYQDLTR KPKEAILPEF NTSMYGLVPK LINEIRFFHN YAQHIAISNS CGEILRDVYQ 300 IPGRRVHVIV NGVDENEFGE DKRLGNEFRS KIGVPANATL VLGVAGRLVK DKGHPILYEA 360 ISKFITNHPN VYLVVAGSGP WERRYRELGP QVLVVGSMAP SELKAFYNSI DVFVNPTLRP 420 QGLDLTLMEA MMSGTPVMAS RFASIKGTII VDDEFGFMFS PNVESLVEAL EIAAEEGAER 480 LAKRGEACRE YAASMFTATN MALAHERLFL CMKNQTFCAY P* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd03799 | GT1_amsK_like | 1.0e-28 | 119 | 462 | 370 | + This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor. | ||
cd03811 | GT1_WabH_like | 7.0e-32 | 134 | 457 | 335 | + This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. | ||
TIGR00032 | argG | 2.0e-34 | 134 | 462 | 349 | + argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria [Amino acid biosynthesis, Glutamate family]. | ||
cd03798 | GT1_wlbH_like | 3.0e-40 | 134 | 462 | 351 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
cd03801 | GT1_YqgM_like | 4.0e-63 | 119 | 509 | 402 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002271072.1 | 0 | 78 | 521 | 39 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002271108.1 | 0 | 34 | 521 | 4 | 492 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303479.1 | 0 | 34 | 520 | 4 | 488 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326600.1 | 0 | 34 | 520 | 4 | 487 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519899.1 | 0 | 34 | 521 | 5 | 486 | glycosyltransferase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2gek_A | 0.000000002 | 132 | 501 | 33 | 377 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 2gej_A | 0.000000002 | 132 | 501 | 33 | 377 | A Chain A, Crystal Structure Of Phosphatidylinositol Mannosyltransferase (Pima) From Mycobacterium Smegmatis In Complex With Gdp-Man |
PDB | 3c4v_B | 0.00000003 | 134 | 502 | 22 | 396 | A Chain A, Crystal Structure Of Phosphatidylinositol Mannosyltransferase (Pima) From Mycobacterium Smegmatis In Complex With Gdp-Man |
PDB | 3c4v_A | 0.00000003 | 134 | 502 | 22 | 396 | A Chain A, Crystal Structure Of Phosphatidylinositol Mannosyltransferase (Pima) From Mycobacterium Smegmatis In Complex With Gdp-Man |
PDB | 3c4q_B | 0.00000003 | 134 | 502 | 22 | 396 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The First Step In Mycothiol Biosynthesis. Organism : Corynebacterium Glutamicum- Complex With Udp |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
AM732415 | 262 | 202 | 463 | 0 |
GR186222 | 250 | 214 | 463 | 0 |
FG163343 | 243 | 278 | 520 | 0 |
EX268447 | 309 | 57 | 363 | 0 |
EX263793 | 270 | 67 | 334 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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