y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G128300.1 |
Family | GT4 |
Protein Properties | Length: 489 Molecular Weight: 55261.5 Isoelectric Point: 8.7267 |
Chromosome | Chromosome/Scaffold: 01 Start: 10391126 End: 10392592 |
Description | UDP-Glycosyltransferase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT4 | 308 | 442 | 6.1e-24 |
VLGVAGRLVKDKGHPILYEAFSEFMTEHPDVYLIVAGSGPWEQRYKELGPRVLVLGSMNPSELRAFYNSIDIFVNPTLRPQGLDLTLMEAMMSGKPVMAS RFPSIKGTIVVDDEFGFMFSPNVESLLETLEAVAM |
Full Sequence |
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Protein Sequence Length: 489 Download |
MPFNNKPKKP YAIPSQSKSN LCTTLFFVVL FTIPALFLLH APTTSICTTL IANHARPWSG 60 DLRNAEFAWN RLAFIENKPP PVKLKIAVFS RKWPFGTTPG GMERHAYTLH TALAHRGHQV 120 HIFTSPVDEN SPSVSHASVI SYPQIHFHEG EPGKWIHNKA WKQFEEENQR AKPFDVVHSE 180 SVALPYWLAR RVPNLAVSWH GIALEGLQSS IFQDLARKPN EAITPYFNKS LQGFVPRVLD 240 EIRFFKKYEH HVAISDSCGE MLRDVYQIPR RRVHVIVNGV DEDDFGEDVR SGHEFRSRIG 300 VPVNASLVLG VAGRLVKDKG HPILYEAFSE FMTEHPDVYL IVAGSGPWEQ RYKELGPRVL 360 VLGSMNPSEL RAFYNSIDIF VNPTLRPQGL DLTLMEAMMS GKPVMASRFP SIKGTIVVDD 420 EFGFMFSPNV ESLLETLEAV AMEGSRRLAQ RGKACRQYAA SMFTARKMAL AYERLFLCIK 480 NETFCTYD* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0438 | RfaG | 8.0e-34 | 85 | 482 | 410 | + Glycosyltransferase [Cell envelope biogenesis, outer membrane] | ||
cd03811 | GT1_WabH_like | 5.0e-38 | 100 | 465 | 377 | + This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. | ||
TIGR00032 | argG | 2.0e-39 | 100 | 475 | 396 | + argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria [Amino acid biosynthesis, Glutamate family]. | ||
cd03798 | GT1_wlbH_like | 2.0e-40 | 100 | 476 | 398 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
cd03801 | GT1_YqgM_like | 3.0e-65 | 85 | 476 | 405 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002271072.1 | 0 | 40 | 487 | 37 | 492 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002271108.1 | 0 | 1 | 487 | 1 | 491 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303479.1 | 0 | 1 | 487 | 1 | 488 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326600.1 | 0 | 1 | 488 | 1 | 488 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519899.1 | 0 | 1 | 487 | 2 | 485 | glycosyltransferase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3c4v_B | 0.0000001 | 266 | 427 | 183 | 354 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3c4v_A | 0.0000001 | 266 | 427 | 183 | 354 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3c4q_B | 0.0000001 | 266 | 427 | 183 | 354 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The First Step In Mycothiol Biosynthesis. Organism : Corynebacterium Glutamicum- Complex With Udp |
PDB | 3c4q_A | 0.0000001 | 266 | 427 | 183 | 354 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The First Step In Mycothiol Biosynthesis. Organism : Corynebacterium Glutamicum- Complex With Udp |
PDB | 3c48_B | 0.0000001 | 266 | 427 | 203 | 374 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The First Step In Mycothiol Biosynthesis. Organism: Corynebacterium Glutamicum- Apo (Open) Structure. |