Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS360 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN001 | |||||||||||||
| Seed protein property |
|
|||||||||||||
| Phage property |
|
|||||||||||||
| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF21825 | |||||||||||||
| Phrog | phrog_7158,phrog_4201,phrog_1794,phrog_3011,phrog_10401 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029,APIS211,APIS245,APIS283,APIS315,APIS356,APIS372,APIS373,APIS378 which has seed protein. | |||||||||||||
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Download
help
Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS360 | IMGVR_UViG_3300023301_002375|3300023301|Ga0209414_10067228 | 5 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
Family members, sources, and their hosts help
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300023301_002375|3300023301|Ga0209414_10067228 | 100.000 | 1.068E-35 | 124 | 1.000% | IMGVR | PF21825 | phrog_7158 phrog_4201 phrog_1794 phrog_3011 phrog_10401 | ||
| IMGVR_UViG_3300020045_011619|3300020045|Ga0206662_10066374 | 50.200 | 1.242E-13 | 61 | 0.984% | IMGVR | PF21825 | phrog_7158 phrog_4201 phrog_1794 phrog_3011 phrog_10401 | ||
| IMGVR_UViG_3300023284_000411|3300023284|Ga0255798_1000009834 | 56.900 | 1.128E-16 | 70 | 0.968% | IMGVR | PF21825 | phrog_7158 phrog_4201 phrog_1794 phrog_3011 phrog_10401 | ||
| IMGVR_UViG_3300025671_000857|3300025671|Ga0208898_100116920 | 40.800 | 3.167E-08 | 46 | 0.857% | IMGVR | PF21825 | phrog_7158 phrog_4201 phrog_1794 phrog_3011 phrog_10401 | ||
| IMGVR_UViG_3300022752_000151|3300022752|Ga0214917_1000079938 | 43.600 | 9.383E-10 | 50 | 0.952% | IMGVR | PF21825 | phrog_7158 phrog_4201 phrog_1794 phrog_3011 phrog_10401 |