dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS353

Inhibited defense system

CLAN ID

CLAN001

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
KT887557_00038	gene_page:	116	13342.1	6.2305	-0.5

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF21825

Phrog

phrog_1802,phrog_7158,phrog_45,phrog_3736,phrog_2051

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029,APIS211,APIS245,APIS283,APIS315,APIS356,APIS372,APIS373,APIS378 which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS353	KT887557_00038	12	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN001

APIS353 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	phage	host	SourceDB	Pfam	Phrog
IMGVR_UViG_3300030366_000020\|3300030366\|Ga0119907_100194215	44.000	9.758E-21	84	0.954%			IMGVR	PF21825	phrog_1802 phrog_7158 phrog_45 phrog_3736 phrog_2051
IMGVR_UViG_3300008221_000138\|3300008221\|Ga0114916_10021862	74.700	2.119E-53	178	1.000%		Pseudomonadaceae	IMGVR	PF21825	phrog_1802 phrog_7158 phrog_45 phrog_3736 phrog_2051
KT887557_00038	100.000	6.025E-75	240	1.000%	Pseudomonas phage phi1	Pseudomonas	INPHARED	PF21825	phrog_1802 phrog_7158 phrog_45 phrog_3736 phrog_2051
IMGVR_UViG_2519899602_000003\|2519899602\|2520298086	74.400	3.987E-53	177	1.000%		Pseudomonas stutzeri	IMGVR	PF21825	phrog_1802 phrog_7158 phrog_45 phrog_3736 phrog_2051
IMGVR_UViG_3300044878_000188\|3300044878\|Ga0436557_0000068_45388_45741	61.900	3.499E-41	143	1.000%			IMGVR	PF21825	phrog_1802 phrog_7158 phrog_45 phrog_3736 phrog_2051
IMGVR_UViG_3300018413_000632\|3300018413\|Ga0181560_100203092	53.200	7.589E-32	116	0.974%			IMGVR	PF21825	phrog_1802 phrog_7158 phrog_45 phrog_3736 phrog_2051
IMGVR_UViG_3300006163_000005\|3300006163\|Ga0070715_1000004796	59.000	1.949E-38	135	1.000%			IMGVR	PF21825	phrog_1802 phrog_7158 phrog_45 phrog_3736 phrog_2051
IMGVR_UViG_3300003775_000002\|3300003775\|Ga0055524_100033633	68.200	3.186E-47	160	1.000%			IMGVR	PF21825	phrog_1802 phrog_7158 phrog_45 phrog_3736 phrog_2051
IMGVR_UViG_3300037471_000493\|3300037471\|Ga0395905_0001500_10379_10738	59.700	4.012E-39	137	0.991%			IMGVR	PF21825	phrog_1802 phrog_7158 phrog_45 phrog_3736 phrog_2051
IMGVR_UViG_2681812979_000007\|2681812979\|2682359383	62.900	3.827E-42	146	1.000%		Herbaspirillum rubrisubalbicans	IMGVR	PF21825	phrog_1802 phrog_7158 phrog_45 phrog_3736 phrog_2051
IMGVR_UViG_3300020045_002149\|3300020045\|Ga0206662_10006966	55.100	2.563E-34	123	0.991%			IMGVR	PF21825	phrog_1802 phrog_7158 phrog_45 phrog_3736 phrog_2051
IMGVR_UViG_3300030217_000014\|3300030217\|Ga0238568_1000211	56.000	3.846E-35	126	0.991%			IMGVR	PF21825	phrog_1802 phrog_7158 phrog_45 phrog_3736 phrog_2051