Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS327 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN001 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF21825 | |||||||||||||
| Phrog | phrog_5749,phrog_8917,phrog_6518,phrog_7507,phrog_635 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029,APIS211,APIS245,APIS283,APIS315,APIS356,APIS372,APIS373,APIS378 which has seed protein. | |||||||||||||
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS327 | IMGVR_UViG_3300043421_000048|3300043421|Ga0451740_0000796_5130_5402 | 4 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
Family members, sources, and their hosts help
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300043421_000048|3300043421|Ga0451740_0000796_5130_5402 | 100.000 | 4.560E-58 | 190 | 1.000% | IMGVR | PF21825 | phrog_5749 phrog_8917 phrog_6518 phrog_7507 phrog_635 | ||
| IMGVR_UViG_3300010313_000030|3300010313|Ga0116211_10053274 | 97.100 | 7.853E-57 | 186 | 1.000% | IMGVR | PF21825 | phrog_5749 phrog_8917 phrog_6518 phrog_7507 phrog_635 | ||
| IMGVR_UViG_3300025116_000043|3300025116|Ga0209207_10043434 | 97.100 | 7.853E-57 | 186 | 1.000% | IMGVR | PF21825 | phrog_5749 phrog_8917 phrog_6518 phrog_7507 phrog_635 | ||
| IMGVR_UViG_3300020176_000010|3300020176|Ga0181556_100010285 | 52.200 | 2.756E-23 | 90 | 0.967% | IMGVR | PF21825 | phrog_5749 phrog_8917 phrog_6518 phrog_7507 phrog_635 |