Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS323 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN001 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF21825 | |||||||||||||
| Phrog | phrog_678,phrog_177,phrog_988,phrog_2488,phrog_487 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029,APIS211,APIS245,APIS283,APIS315,APIS356,APIS372,APIS373,APIS378 which has seed protein. | |||||||||||||
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS323 | IMGVR_UViG_3300037420_001065|3300037420|Ga0395906_0002229_11978_12487 | 4 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
Family members, sources, and their hosts help
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300037420_001065|3300037420|Ga0395906_0002229_11978_12487 | 100.000 | 1.046E-107 | 338 | 1.000% | IMGVR | PF21825 | phrog_678 phrog_177 phrog_988 phrog_2488 phrog_487 | ||
| IMGVR_UViG_2501025504_000001|2501025504|2501411049 | 45.000 | 8.520E-33 | 122 | 0.840% | Paraburkholderia silvatlantica | IMGVR | PF21825 | phrog_678 phrog_177 phrog_988 phrog_2488 phrog_487 | |
| IMGVR_UViG_2510917014_000002|2510917014|2511096498 | 43.000 | 2.966E-35 | 129 | 0.976% | Paraburkholderia silvatlantica | IMGVR | PF21825 | phrog_678 phrog_177 phrog_988 phrog_2488 phrog_487 | |
| IMGVR_UViG_3300049460_000023|3300049460|Ga0495682_0006629_217_756 | 36.800 | 1.056E-28 | 110 | 0.976% | IMGVR | PF21825 | phrog_678 phrog_177 phrog_988 phrog_2488 phrog_487 |