Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS318 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN001 | |||||||||||||
| Seed protein property |
|
|||||||||||||
| Phage property |
|
|||||||||||||
| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF21825 | |||||||||||||
| Phrog | phrog_1980,phrog_52,phrog_4704,phrog_56,phrog_530 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029,APIS211,APIS245,APIS283,APIS315,APIS356,APIS372,APIS373,APIS378 which has seed protein. | |||||||||||||
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Download
help
Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS318 | IMGVR_UViG_3300025896_000477|3300025896|Ga0208916_1000118515 | 3 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
Family members, sources, and their hosts help
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300025896_000477|3300025896|Ga0208916_1000118515 | 100.000 | 2.568E-92 | 292 | 1.000% | IMGVR | PF21825 | phrog_1980 phrog_52 phrog_4704 phrog_56 phrog_530 | ||
| IMGVR_UViG_3300006805_002882|3300006805|Ga0075464_100035616 | 91.800 | 2.568E-92 | 292 | 1.000% | Rhodobacteraceae | IMGVR | PF21825 | phrog_1980 phrog_52 phrog_4704 phrog_56 phrog_530 | |
| IMGVR_UViG_3300006417_000672|3300006417|Ga0069787_1004104611 | 49.100 | 2.847E-39 | 139 | 0.967% | IMGVR | PF21825 | phrog_1980 phrog_52 phrog_4704 phrog_56 phrog_530 |