Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS306 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN001 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF21825 | |||||||||||||
| Phrog | phrog_317,phrog_2249,phrog_121,phrog_645,phrog_3767 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029,APIS211,APIS245,APIS283,APIS315,APIS356,APIS372,APIS373,APIS378 which has seed protein. | |||||||||||||
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS306 | IMGVR_UViG_3300042112_000578|3300042112|Ga0451517_0002316_1017_1220 | 3 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
Family members, sources, and their hosts help
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300042112_000578|3300042112|Ga0451517_0002316_1017_1220 | 100.000 | 1.423E-36 | 127 | 1.000% | IMGVR | PF21825 | phrog_317 phrog_2249 phrog_121 phrog_645 phrog_3767 | ||
| IMGVR_UViG_3300042543_000416|3300042543|Ga0453077_0000527_17355_17558 | 68.300 | 3.829E-25 | 94 | 1.000% | IMGVR | PF21825 | phrog_317 phrog_2249 phrog_121 phrog_645 phrog_3767 | ||
| IMGVR_UViG_3300033072_000249|3300033072|Ga0364570_1011424 | 47.600 | 7.415E-13 | 59 | 0.955% | IMGVR | PF21825 | phrog_317 phrog_2249 phrog_121 phrog_645 phrog_3767 |