Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS268 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN001 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF21825 | |||||||||||||
| Phrog | phrog_1762,phrog_3883,phrog_6444,phrog_6651,phrog_4 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029,APIS211,APIS245,APIS283,APIS315,APIS356,APIS372,APIS373,APIS378 which has seed protein. | |||||||||||||
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS268 | IMGVR_UViG_3300037134_000176|3300037134|Ga0395989_000961_290_649 | 3 | HMM model | Member alignment |
|---|
Host Taxa distribution
Length distribution
Family members, sources, and their hosts help
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300037134_000176|3300037134|Ga0395989_000961_290_649 | 100.000 | 1.197E-73 | 237 | 1.000% | IMGVR | PF21825 | phrog_1762 phrog_3883 phrog_6444 phrog_6651 phrog_4 | ||
| IMGVR_UViG_3300050033_000521|3300050033|Ga0494720_002962_13677_14045 | 86.500 | 7.931E-66 | 214 | 0.992% | IMGVR | PF21825 | phrog_1762 phrog_3883 phrog_6444 phrog_6651 phrog_4 | ||
| IMGVR_UViG_3300050010_000660|3300050010|Ga0334871_008219_3940_4299 | 93.000 | 7.969E-73 | 234 | 1.000% | IMGVR | PF21825 | phrog_1762 phrog_3883 phrog_6444 phrog_6651 phrog_4 |