dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS256

Inhibited defense system

CLAN ID

CLAN001

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_3300000053_000065\|3300000053\|Draft_0800713	gene_page:	134	14757.1	6.7145	0.5

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF21825

Phrog

phrog_454,phrog_687,phrog_4219,phrog_2263,phrog_773

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029,APIS211,APIS245,APIS283,APIS315,APIS356,APIS372,APIS373,APIS378 which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS256	IMGVR_UViG_3300000053_000065\|3300000053\|Draft_0800713	14	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN001

APIS256 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	host	SourceDB	Pfam	Phrog
IMGVR_UViG_3300000053_000065\|3300000053\|Draft_0800713	100.000	3.022E-85	271	1.000%		IMGVR	PF21825	phrog_454 phrog_687 phrog_4219 phrog_2263 phrog_773
IMGVR_UViG_2519899535_000001\|2519899535\|2520055563	85.100	7.305E-74	238	0.993%	Acidovorax sp000302535	IMGVR	PF21825	phrog_454 phrog_687 phrog_4219 phrog_2263 phrog_773
IMGVR_UViG_2832220722_000003\|2832220722\|2832224095	75.700	1.414E-63	209	0.993%	Alicycliphilus denitrificans	IMGVR	PF21825	phrog_454 phrog_687 phrog_4219 phrog_2263 phrog_773
IMGVR_UViG_3300033997_000563\|3300033997\|Ga0310131_001499_2308_2709	68.300	2.399E-55	185	0.993%	Burkholderiaceae	IMGVR	PF21825	phrog_454 phrog_687 phrog_4219 phrog_2263 phrog_773
IMGVR_UViG_3300031416_000352\|3300031416\|Ga0308171_1000027290	69.500	1.020E-56	189	0.993%	UBA11524	IMGVR	PF21825	phrog_454 phrog_687 phrog_4219 phrog_2263 phrog_773
IMGVR_UViG_3300024955_000001\|3300024955\|Ga0208123_1000633	85.400	2.832E-74	239	0.993%	Burkholderiaceae	IMGVR	PF21825	phrog_454 phrog_687 phrog_4219 phrog_2263 phrog_773
IMGVR_UViG_3300028586_000359\|3300028586\|Ga0265798_100350497	52.300	7.961E-44	152	0.993%		IMGVR	PF21825	phrog_454 phrog_687 phrog_4219 phrog_2263 phrog_773
IMGVR_UViG_3300046513_000272\|3300046513\|Ga0495616_0000293_13902_14333	57.100	5.294E-43	149	0.993%		IMGVR	PF21825	phrog_454 phrog_687 phrog_4219 phrog_2263 phrog_773
IMGVR_UViG_3300015598_000071\|3300015598\|Ga0182405_100335256	73.100	1.073E-60	200	0.993%	Comamonas	IMGVR	PF21825	phrog_454 phrog_687 phrog_4219 phrog_2263 phrog_773
IMGVR_UViG_3300034110_001252\|3300034110\|Ga0335055_0000202_6660_7064	73.100	1.073E-60	200	0.993%	Comamonas	IMGVR	PF21825	phrog_454 phrog_687 phrog_4219 phrog_2263 phrog_773
IMGVR_UViG_2690315896_000002\|2690315896\|2691476910	72.400	1.488E-26	102	0.504%	Comamonas acidovorans	IMGVR	PF21825	phrog_454 phrog_687 phrog_4219 phrog_2263 phrog_773
IMGVR_UViG_3300046522_000440\|3300046522\|Ga0495643_0005183_7880_8374	47.200	1.419E-39	139	0.993%		IMGVR	PF21825	phrog_454 phrog_687 phrog_4219 phrog_2263 phrog_773
IMGVR_UViG_2609460195_000001\|2609460195\|2611885082	50.600	8.278E-41	143	0.993%	Massilia alkalitolerans	IMGVR	PF21825	phrog_454 phrog_687 phrog_4219 phrog_2263 phrog_773
IMGVR_UViG_3300048091_000093\|3300048091\|Ga0495626_0000593_14285_14752	54.100	4.642E-45	155	0.993%		IMGVR	PF21825	phrog_454 phrog_687 phrog_4219 phrog_2263 phrog_773