dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS254

Inhibited defense system

CLAN ID

CLAN001

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_3300028588_000054\|3300028588\|Ga0265780_1000121522	gene_page:	209	22478.4	5.0153	-5.5

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF13876,PF21825

Phrog

phrog_1535,phrog_2392,phrog_1506,phrog_262,phrog_5311

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029,APIS211,APIS245,APIS283,APIS315,APIS356,APIS372,APIS373,APIS378 which has seed protein.

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS254	IMGVR_UViG_3300028588_000054\|3300028588\|Ga0265780_1000121522	15	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN001

APIS254 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.

Member	pident	evalue	bitscore	qcovs	host	SourceDB	Pfam	Phrog
IMGVR_UViG_3300028588_000054\|3300028588\|Ga0265780_1000121522	100.000	4.051E-138	428	1.000%		IMGVR	PF13876	phrog_1535 phrog_2392 phrog_1506 phrog_262 phrog_5311
IMGVR_UViG_3300013025_000005\|3300013025\|Ga0157367_100012626	53.300	8.971E-61	205	0.962%		IMGVR	PF13876	phrog_1535 phrog_2392 phrog_1506 phrog_262 phrog_5311
IMGVR_UViG_3300047509_000025\|3300047509\|Ga0467026_0000289_41680_42273	57.700	2.713E-68	226	0.967%		IMGVR	PF13876	phrog_1535 phrog_2392 phrog_1506 phrog_262 phrog_5311
IMGVR_UViG_3300021414_000036\|3300021414\|Ga0213834_10029026	51.900	1.795E-67	224	0.976%		IMGVR	PF13876	phrog_1535 phrog_2392 phrog_1506 phrog_262 phrog_5311
IMGVR_UViG_3300046507_000356\|3300046507\|Ga0495606_0000635_22116_22736	57.700	1.980E-68	227	0.967%	CAG-448	IMGVR	PF13876	phrog_1535 phrog_2392 phrog_1506 phrog_262 phrog_5311
IMGVR_UViG_3300031420_000245\|3300031420\|Ga0308169_1000687110	65.600	8.535E-83	268	0.981%		IMGVR	PF13876	phrog_1535 phrog_2392 phrog_1506 phrog_262 phrog_5311
IMGVR_UViG_3300037193_000461\|3300037193\|Ga0226660_0350880_1321_1956	64.000	3.399E-80	261	0.981%		IMGVR	PF13876	phrog_1535 phrog_2392 phrog_1506 phrog_262 phrog_5311
IMGVR_UViG_3300048089_000025\|3300048089\|Ga0495614_0001942_1824_2393	55.800	1.473E-65	218	0.971%		IMGVR	PF13876	phrog_1535 phrog_2392 phrog_1506 phrog_262 phrog_5311
IMGVR_UViG_3300014679_000007\|3300014679\|Ga0121496_10018911	52.000	5.619E-69	228	0.971%		IMGVR	PF13876	phrog_1535 phrog_2392 phrog_1506 phrog_262 phrog_5311
IMGVR_UViG_3300027870_000342\|3300027870\|Ga0209023_100010109	41.600	3.278E-42	151	0.976%		IMGVR	PF13876	phrog_1535 phrog_2392 phrog_1506 phrog_262 phrog_5311
IMGVR_UViG_3300031112_000239\|3300031112\|Ga0308156_100082734	50.200	6.010E-57	194	0.981%		IMGVR	PF13876	phrog_1535 phrog_2392 phrog_1506 phrog_262 phrog_5311
IMGVR_UViG_3300049016_000028\|3300049016\|Ga0498748_000010_14422_14997	49.300	1.544E-56	192	1.000%		IMGVR	PF13876	phrog_1535 phrog_2392 phrog_1506 phrog_262 phrog_5311
IMGVR_UViG_3300010218_000051\|3300010218\|Ga0136212_10018808	64.900	1.062E-81	265	0.981%		IMGVR	PF13876	phrog_1535 phrog_2392 phrog_1506 phrog_262 phrog_5311
IMGVR_UViG_3300043421_000033\|3300043421\|Ga0451740_0000039_33159_33788	52.900	1.860E-61	207	0.976%		IMGVR	PF13876	phrog_1535 phrog_2392 phrog_1506 phrog_262 phrog_5311
IMGVR_UViG_3300046522_000272\|3300046522\|Ga0495643_0000679_15332_15991	57.700	3.563E-74	243	0.981%		IMGVR	PF13876	phrog_1535 phrog_2392 phrog_1506 phrog_262 phrog_5311