Seed proteins |
Seed protein 3D structures |
Structural homologs |
Family infomation |
Homology to other families |
Family members, sources, and their hosts
Seed protein information help
| APIS family ID | APIS252 | |||||||||||||
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| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN001 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF11195,PF21825 | |||||||||||||
| Phrog | phrog_4197,phrog_346,phrog_992,phrog_1293,phrog_1216 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029,APIS211,APIS245,APIS283,APIS315,APIS356,APIS372,APIS373,APIS378 which has seed protein. | |||||||||||||
Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
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Family information Download help
| Fam ID | Seed protein | Member count | Model | Alignment | APIS252 | IMGVR_UViG_3300047323_000157|3300047323|Ga0495683_0000328_14848_15588 | 5 | HMM model | Member alignment |
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Host Taxa distribution
Length distribution
Family members, sources, and their hosts help
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300047323_000157|3300047323|Ga0495683_0000328_14848_15588 | 100.000 | 5.723E-163 | 501 | 1.000% | Gammaproteobacteria | IMGVR | PF11195 | phrog_4197 phrog_346 phrog_992 phrog_1293 phrog_1216 | |
| IMGVR_UViG_3300046542_000343|3300046542|Ga0495597_0001090_12058_12747 | 60.300 | 1.619E-88 | 287 | 0.988% | IMGVR | PF11195 | phrog_4197 phrog_346 phrog_992 phrog_1293 phrog_1216 | ||
| IMGVR_UViG_3300046472_000044|3300046472|Ga0495580_0006871_8468_9169 | 62.300 | 1.032E-93 | 302 | 1.000% | IMGVR | PF11195 | phrog_4197 phrog_346 phrog_992 phrog_1293 phrog_1216 | ||
| IMGVR_UViG_3300031088_000818|3300031088|Ga0308157_1000078155 | 58.400 | 5.250E-84 | 274 | 0.980% | IMGVR | PF11195 | phrog_4197 phrog_346 phrog_992 phrog_1293 phrog_1216 | ||
| IMGVR_UViG_3300044956_000756|3300044956|Ga0438282_000470_21418_22311 | 42.500 | 9.447E-65 | 218 | 0.988% | IMGVR | PF11195 | phrog_4197 phrog_346 phrog_992 phrog_1293 phrog_1216 |