dbAPIS: a database of anti-prokaryotic immune systems

Seed protein information help

APIS family ID

APIS230

Inhibited defense system

CLAN ID

CLAN001

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_2767802354_000003\|2767802354\|2769867598	gene_page:	95	10967.7	8.5442	3

Phage property

Phage	Assembly id

PMID/References

PDB structures

;

Pfam domains

PF21825

Phrog

Host taxa

Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029,APIS211,APIS245,APIS283,APIS315,APIS356,APIS372,APIS373,APIS378 which has seed protein.

Fam ID	Seed protein	Member count	Model	Alignment
APIS230	IMGVR_UViG_2767802354_000003\|2767802354\|2769867598	5	HMM model	Member alignment

APIS230 has no similar APIS family.

Member	pident	evalue	bitscore	qcovs	host	SourceDB	Pfam	Phrog
IMGVR_UViG_2767802354_000003\|2767802354\|2769867598	100.000	6.381E-59	193	1.000%	Comamonas testosteroni	IMGVR	PF21825	phrog_3883 phrog_5302 phrog_1062 phrog_438 phrog_2263
IMGVR_UViG_3300020050_006576\|3300020050\|Ga0206642_10003337	44.300	1.183E-14	66	0.832%		IMGVR	PF21825	phrog_3883 phrog_5302 phrog_1062 phrog_438 phrog_2263
IMGVR_UViG_3300020050_005445\|3300020050\|Ga0206642_100055425	51.300	1.493E-13	63	0.653%		IMGVR	PF21825	phrog_3883 phrog_5302 phrog_1062 phrog_438 phrog_2263
IMGVR_UViG_3300024949_000033\|3300024949\|Ga0208266_10007059	38.700	1.286E-15	68	0.968%		IMGVR	PF21825	phrog_3883 phrog_5302 phrog_1062 phrog_438 phrog_2263
IMGVR_UViG_3300004193_000002\|3300004193\|Ga0066445_100001650	38.700	1.286E-15	68	0.968%		IMGVR	PF21825	phrog_3883 phrog_5302 phrog_1062 phrog_438 phrog_2263