Seed protein information help

APIS family ID APIS061
Inhibited defense system
CLAN ID CLAN023
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300024337_000617|3300024337|Ga0255060_100056963
gene_page: 200 22213.85 10.4089 16.5
Phage property
Phage Assembly id
PMID/References
PDB structures ;
Pfam domains
Phrog phrog_22140,phrog_23843,phrog_2428
Host taxa
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending Thoeris because it belongs to the same clan as family APIS024,APIS029 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.55 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS061 IMGVR_UViG_3300024337_000617|3300024337|Ga0255060_100056963 9 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Homology to other families       download full data without filtering help

Clan ID: CLAN023

Hit APIS family E-Value Query Start Query End Hit Start Hit End Immune system Seed protein
APIS024 9.00E-67 74 200 46 163 Thoeris UPI13470.1
APIS070 2.83E-64 74 200 80 199 - IMGVR_UViG_3300037297_000240|3300037297|Ga0394146_0000041_21955_22497