Seed protein information help

APIS family ID APIS057
Inhibited defense system
CLAN ID CLAN004
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300021167_000128|3300021167|Ga0216365_13592277
gene_page: 324 37511.63 4.7050 -11.5
Phage property
Phage Assembly id
PMID/References
PDB structures ;
Pfam domains
Phrog phrog_20113
Host taxa
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending Gabija because it belongs to the same clan as family APIS005 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.74 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS057 IMGVR_UViG_3300021167_000128|3300021167|Ga0216365_13592277 3 HMM model Member alignment

Host Taxa distribution

Length distribution

Length Distribution Bar chart

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300020037_001785|3300020037|Ga0206644_10027147 83.232 0.0 555 100% IMGVR phrog_20113
IMGVR_UViG_3300020050_006093|3300020050|Ga0206642_10060502 66.768 3.19e-146 423 100% IMGVR phrog_20113
IMGVR_UViG_3300021167_000128|3300021167|Ga0216365_13592277 100.000 0.0 661 100% IMGVR phrog_20113